Clone BS19530 Report

Search the DGRC for BS19530

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)37Cg-RA
Protein status:BS19530.pep: full length peptide match
Sequenced Size:350

Clone Sequence Records

BS19530.complete Sequence

350 bp assembled on 2011-01-27

GenBank Submission: KX802911

> BS19530.complete
GAAGTTATCAGTCGACATGGGAGCATTGGCAGAGCTGGCTGGTGATGAGA
AAAACGGCGAAGGATCTCGTACTTTTGTGTTCACCAACGAGGGCCACACG
CTGGGAAATGCGCTGAAAACGATCATAGCCCGCTACCCGGAGGTGGATTT
CTGTGGCTACACGATTCCGCATCCCACGGAGCAGAAGCTGCACTTCCGCA
TTCAATCCCGTCGAGACAGAGCCATAGATATACTTAAACGGGGACTGGAG
GATCTGGAGGGTCTGTGTGATCATACAATCGTTACGTTCGAAAAGGAGAT
GGCCGAGTTTAATGCAATGAAAGTGGAAAATTAGAAGCTTTCTAGACCAT

BS19530.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cg-RA 318 CG10685-PA 1..318 17..334 1590 100 Plus
l(2)37Cg-RD 399 CG10685-PD 99..399 34..334 1505 100 Plus
l(2)37Cg-RC 351 CG10685-PC 52..351 35..334 1500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cg-RA 404 CG10685-RA 58..376 17..335 1595 100 Plus
l(2)37Cg-RD 681 CG10685-RD 352..653 34..335 1510 100 Plus
l(2)37Cg-RC 633 CG10685-RC 305..605 35..335 1505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19133051..19133353 335..33 1515 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:56:45 has no hits.

BS19530.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:39 Download gff for BS19530.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cg-RA 58..375 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:36 Download gff for BS19530.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cg-RA 58..375 17..334 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:25 Download gff for BS19530.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)37Cg-RA 58..375 17..334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:25 Download gff for BS19530.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19133052..19133351 35..334 100 <- Minus
2L 19133409..19133426 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:36 Download gff for BS19530.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19133052..19133351 35..334 100 <- Minus
arm_2L 19133409..19133426 17..34 100   Minus

BS19530.pep Sequence

Translation from 16 to 333

> BS19530.pep
MGALAELAGDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTI
PHPTEQKLHFRIQSRRDRAIDILKRGLEDLEGLCDHTIVTFEKEMAEFNA
MKVEN*

BS19530.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)37Cg-PA 105 CG10685-PA 1..105 1..105 551 100 Plus
l(2)37Cg-PC 116 CG10685-PC 18..116 7..105 523 100 Plus
l(2)37Cg-PD 132 CG10685-PD 34..132 7..105 523 100 Plus