Clone BS19533 Report

Search the DGRC for BS19533

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG11539-RA
Protein status:BS19533.pep: full length peptide match
Sequenced Size:635

Clone Sequence Records

BS19533.complete Sequence

635 bp assembled on 2011-01-27

GenBank Submission: KX804757

> BS19533.complete
GAAGTTATCAGTCGACATGCATCTAAACGAGAACACCAAAATACTGGGTC
ACAGGGTCATCCTTGTGCCCTACGAAGCGCGCCACGTGCCCAAGTACCAC
GAGTGGATGAGCAACGAGACCCTGAGGGAGTTGACCGCATCCGAGGAACT
GACCTTAGAAGAGGAGCACGAGATGCAAAGGAGTTGGAGGGAGGACAGCG
ACAAGCTGACCTTCATTGTCCTGGATGCAGAGACTTATTCGCGTGATCAG
GATGAGATTGCCGCCATGGTGGGCGACACCAATCTCTTCCTGCACCAAGA
TCCCGATAGCCAGATACCAACGGCGGAGGCGGAAATCATGATTGCCGAAC
CTTATGCACGGGGCAAGGGATTCGGCAGGGAAGCCATGCTCCTCATGCTC
AAGTACGCCCAATCGCAGCCCCAGCTTAAATTGGATAAATTCGAGGTCAA
GATCGACATGGACAACGCTGCATCGCTGCATTTGTTTAAGAGTTTTATGT
TCGTGGAGACGCGTCGAGTGGAGATCTTCCACGAGGTCACCCTGGAGCGA
CCTATCACTCCAGATTGGATCAACTGGCTGGACCAGCAGGTGGATCTGCG
TATGCAGTGCTATCAGTGAAAGCTTTCTAGACCAT

BS19533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11539-RB 603 CG11539-PB 1..603 17..619 3015 100 Plus
CG11539-RA 603 CG11539-PA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11539-RB 810 CG11539-RB 91..695 17..621 3025 100 Plus
CG11539-RA 737 CG11539-RA 18..622 17..621 3025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31615399..31616003 621..17 3025 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:57:21 has no hits.

BS19533.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:41 Download gff for BS19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 18..619 17..618 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:46 Download gff for BS19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 18..619 17..618 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:45 Download gff for BS19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG11539-RA 18..619 17..618 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:45 Download gff for BS19533.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31615402..31616003 17..618 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:46 Download gff for BS19533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27441124..27441725 17..618 100   Minus

BS19533.pep Sequence

Translation from 16 to 618

> BS19533.pep
MHLNENTKILGHRVILVPYEARHVPKYHEWMSNETLRELTASEELTLEEE
HEMQRSWREDSDKLTFIVLDAETYSRDQDEIAAMVGDTNLFLHQDPDSQI
PTAEAEIMIAEPYARGKGFGREAMLLMLKYAQSQPQLKLDKFEVKIDMDN
AASLHLFKSFMFVETRRVEIFHEVTLERPITPDWINWLDQQVDLRMQCYQ
*

BS19533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11539-PB 200 CG11539-PB 1..200 1..200 1049 100 Plus
CG11539-PA 200 CG11539-PA 1..200 1..200 1049 100 Plus