Clone BS19535 Report

Search the DGRC for BS19535

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG12811-RA
Protein status:BS19535.pep: full length peptide match
Sequenced Size:644

Clone Sequence Records

BS19535.complete Sequence

644 bp assembled on 2011-01-27

GenBank Submission: KX804965

> BS19535.complete
GAAGTTATCAGTCGACATGATCAATCCCCAACTTTTGCTGATCGCCGCGC
TTATTGCGTTTATTGGGAAAGTGGCACACGCTCAAATCGCCTTTGTTGAG
GATCAAGACATTGATAAGAAGAAGGCCAACCTTGCGGGTCGCAAGCCACT
GTATTCGCCAGCCCGATGCCCCAAGCACCAGCTTCTTTATCCGGGGGACC
AGCAGAAGCAGAACGACTGGGTTTGCGACTGCGCGCCAGCCACACTGTAT
TACCCGGAGACCGATGGCTGCTATCCGGCCTACCGACAGGGACCCTGTGA
GGCTGGACAGATTCTGGTGCTCTACAAGGAGGAGATCATCCCGAAGTGCG
TACGAAATCCATGTAACAGGGACGGACACTTTATGATTCGCGACACATGC
TATGAGTTCGGAAACACCAAGAAGGAAGAAAACCCGTGTCCTTACCAGGA
GGCTTCCTTTGTACTTGGCGTGAATCCCACCAACTTGATGGTGGACTGTG
TGAAGCTGTCCGTTCAACTGGAGACGCGTATTTCGGACACGGAGCAGGCT
CCGCCGGAATACTACGTTGATTTGGCCGAGAAATGCGCACGCGGCAGTCG
CCTAATGGCTCAGGGAAAGTGTCCTTAAAAGCTTTCTAGACCAT

BS19535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12811-RA 612 CG12811-PA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12811-RA 1002 CG12811-RA 262..874 17..629 3065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10047380..10047771 629..238 1960 100 Minus
3R 32079331 3R 10048416..10048536 137..17 605 100 Minus
3R 32079331 3R 10047841..10047944 239..136 520 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:54:55 has no hits.

BS19535.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:36 Download gff for BS19535.complete
Subject Subject Range Query Range Percent Splice Strand
CG12811-RA 32..641 17..626 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:05 Download gff for BS19535.complete
Subject Subject Range Query Range Percent Splice Strand
CG12811-RA 262..871 17..626 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:40 Download gff for BS19535.complete
Subject Subject Range Query Range Percent Splice Strand
CG12811-RA 262..871 17..626 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:40 Download gff for BS19535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10047841..10047943 137..239 100 <- Minus
3R 10048417..10048536 17..136 100   Minus
3R 10047383..10047769 240..626 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:05 Download gff for BS19535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5873105..5873491 240..626 100 <- Minus
arm_3R 5873563..5873665 137..239 100 <- Minus
arm_3R 5874139..5874258 17..136 100   Minus

BS19535.pep Sequence

Translation from 16 to 627

> BS19535.pep
MINPQLLLIAALIAFIGKVAHAQIAFVEDQDIDKKKANLAGRKPLYSPAR
CPKHQLLYPGDQQKQNDWVCDCAPATLYYPETDGCYPAYRQGPCEAGQIL
VLYKEEIIPKCVRNPCNRDGHFMIRDTCYEFGNTKKEENPCPYQEASFVL
GVNPTNLMVDCVKLSVQLETRISDTEQAPPEYYVDLAEKCARGSRLMAQG
KCP*

BS19535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12811-PA 203 CG12811-PA 1..203 1..203 1109 100 Plus