Clone BS19539 Report

Search the DGRC for BS19539

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG14931-RB
Protein status:BS19539.pep: full length peptide match
Sequenced Size:695

Clone Sequence Records

BS19539.complete Sequence

695 bp assembled on 2011-01-27

GenBank Submission: KX806085

> BS19539.complete
GAAGTTATCAGTCGACATGGAGTTACGCAGCCGAACAAACAGGAGATTAG
TTGACTTCCTCAAAAGCGCAGGCGTTTACGAGGAAGGCATGGATATTGAG
GAAATGACCGAATTAGCAAGTGTCGTGCAGCAATCAGCTAGTATCAGTCC
CCAGGATGAGGATCTAGAAAGGGCTCTGCACGAGAGCGAGTCTGATTTTT
TGACTTCGCATCCCAGTGCTTTGCACAACTCCACGATGATCATGTCGCCG
CAAGTGTCCAGAAGAAATCCCTCAGACATGGACAGTCCACCGAGCGAGCC
GATCCGTATAACTTTTCGGGCTTTGGTGCACCGTGCCATGGACTGGAGTC
CCACCACGGGCAATCAAATTCCCGATCGCAAGCGCATTGCTGCGGATCGC
AATCAAAACGTCGAACTAGTTGGCAAACGTTCCAGAGCAACGCCGGCTAT
CAGCATTGGCCAGGCACCGGAGGATGAGCCGCACAATGCCGACGCCACAC
CCGTTTCCCCGGGCAACGAATGCGACTCCGGCGTCAGCTGGGAGGAGATA
TCTTTGTCCAGCGCCAGCGATAGCACCACTCTTCCTTCCATCGGCGAAAT
GCCCGATCGACATTTAATCAGCACCAGCAGCGTCGCCGTCTCGGATTTCT
CAGATGCCAATGAAATCAGCCAGGAATAGAAGCTTTCTAGACCAT

BS19539.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14931-RB 663 CG14931-PB 1..663 17..679 3315 100 Plus
CG14931-RC 672 CG14931-PC 1..672 17..679 3190 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14931-RB 912 CG14931-RB 106..768 17..679 3315 100 Plus
CG14931-RC 1024 CG14931-RC 209..880 17..679 3190 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11788834..11789331 182..679 2490 100 Plus
2L 23513712 2L 11788653..11788769 66..182 585 100 Plus
2L 23513712 2L 11788542..11788591 17..66 250 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:38:26 has no hits.

BS19539.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:43 Download gff for BS19539.complete
Subject Subject Range Query Range Percent Splice Strand
CG14931-RB 82..744 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:45 Download gff for BS19539.complete
Subject Subject Range Query Range Percent Splice Strand
CG14931-RB 106..768 17..679 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:23 Download gff for BS19539.complete
Subject Subject Range Query Range Percent Splice Strand
CG14931-RB 106..768 17..679 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:23 Download gff for BS19539.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11788542..11788590 17..65 100 -> Plus
2L 11788653..11788768 66..181 100 -> Plus
2L 11788834..11789331 182..679 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:45 Download gff for BS19539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11788542..11788590 17..65 100 -> Plus
arm_2L 11788653..11788768 66..181 100 -> Plus
arm_2L 11788834..11789331 182..679 100   Plus

BS19539.pep Sequence

Translation from 16 to 678

> BS19539.pep
MELRSRTNRRLVDFLKSAGVYEEGMDIEEMTELASVVQQSASISPQDEDL
ERALHESESDFLTSHPSALHNSTMIMSPQVSRRNPSDMDSPPSEPIRITF
RALVHRAMDWSPTTGNQIPDRKRIAADRNQNVELVGKRSRATPAISIGQA
PEDEPHNADATPVSPGNECDSGVSWEEISLSSASDSTTLPSIGEMPDRHL
ISTSSVAVSDFSDANEISQE*

BS19539.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14931-PB 220 CG14931-PB 1..220 1..220 1117 100 Plus
CG14931-PC 223 CG14931-PC 1..223 1..220 1103 98.7 Plus