Clone BS19540 Report

Search the DGRC for BS19540

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG15147-RA
Protein status:BS19540.pep: full length peptide match
Sequenced Size:473

Clone Sequence Records

BS19540.complete Sequence

473 bp assembled on 2011-01-27

GenBank Submission: KX802913

> BS19540.complete
GAAGTTATCAGTCGACATGCCCGACAAAAGGCCACTGGATCCACTCCAGC
CGGTGCTCTACATTGACCACTGCCGTTATCGTCAAACTTATCGCAAGCGA
GCCCTGCACCTCCATTCTTCGCTGGCGGAGGCTCTGAGGGCCATTCAGCC
AAGGGTTAAGCTCCAGCTAAGGATCAACGACAAAGGCCCGCCCGAAGATG
GATCCTTTGAGGTTGCTATTGCTCCGCAACCAACCGATGATTCCACGGCC
CGTCAAAGTGTATGGACTGGACTAAGGCGGATGCCCAGTGCATCGAAGGT
TCCCCATGTGGACGACATTCTCACCCCAGTTTGTTTCGCCCTCAAACTGA
GGGATCCGCACAAGGAATCACATCGGCGGATGCTAACCAATTTGCGGCAC
AACGAAGGCAGTCGACCAAGGACGAGGACTATAAAAAATGTGTTAAATAA
TACCTAGAAGCTTTCTAGACCAT

BS19540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15147-RA 441 CG15147-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15147-RA 636 CG15147-RA 164..604 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17625778..17626218 457..17 2205 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:38:36 has no hits.

BS19540.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:44 Download gff for BS19540.complete
Subject Subject Range Query Range Percent Splice Strand
CG15147-RA 129..569 17..457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:49 Download gff for BS19540.complete
Subject Subject Range Query Range Percent Splice Strand
CG15147-RA 129..569 17..457 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:27 Download gff for BS19540.complete
Subject Subject Range Query Range Percent Splice Strand
CG15147-RA 164..604 17..457 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:27 Download gff for BS19540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17625778..17626218 17..457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:49 Download gff for BS19540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17625778..17626218 17..457 100   Minus

BS19540.pep Sequence

Translation from 16 to 456

> BS19540.pep
MPDKRPLDPLQPVLYIDHCRYRQTYRKRALHLHSSLAEALRAIQPRVKLQ
LRINDKGPPEDGSFEVAIAPQPTDDSTARQSVWTGLRRMPSASKVPHVDD
ILTPVCFALKLRDPHKESHRRMLTNLRHNEGSRPRTRTIKNVLNNT*

BS19540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15147-PA 146 CG15147-PA 1..146 1..146 773 100 Plus
BthD-PA 249 CG11177-PA 22..127 7..117 163 36.6 Plus