Clone BS19543 Report

Search the DGRC for BS19543

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5267-RA
Protein status:BS19543.pep: full length peptide match
Sequenced Size:569

Clone Sequence Records

BS19543.complete Sequence

569 bp assembled on 2011-01-27

GenBank Submission: KX801294

> BS19543.complete
GAAGTTATCAGTCGACATGGCAGAAGATTCTGCAGAGGACCAGATTACCT
GGCCGGATGACATTGCCGAGCCAACCTTGGAGTCTGAGTTGACCTGGCCC
AATGAACTTCCGGTAACAGTAACTAATGGCATGACTTTTCGCACCGCTCG
AACCTTGGATCATTTCGATGCTTTGCGAGACGATGACGAGTTCATGGAGA
ACCCGCATAAAAAGGTTTTTGACGAATTTGATAGCCTGGAGCATAGATAC
CACATCGTTCATCCAATAGGTGAAGAAATAGCCCTCAAGCGGAACCCGCT
CCCTGAGGAGAAGTATATCAAGCAGCCCTTCAAGTTCGGCTGCTGTCACA
ACTCCACATATGTGGGATGTGCTGGCGTTTGTCCGGAGACATGCGAATAC
CGCTCCAAATACTGTGTACCGCTTTGCGGACCGCCTTGTCGCTGTAAGCG
TGGTTATGTCTACAATATTCCACATAGCGCATGTACTCTGCGCTCCGACT
GTCCCAAGGGGATCGTTCAGAGTAAGAACGGGATATACAGGGTATTTTTG
TGAAAGCTTTCTAGACCAT

BS19543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5267-RA 537 CG5267-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5267-RA 723 CG5267-RA 63..599 17..553 2685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16755163..16755699 17..553 2685 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:45:44 has no hits.

BS19543.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:58 Download gff for BS19543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5267-RA 63..598 17..552 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:53 Download gff for BS19543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5267-RA 63..598 17..552 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:08 Download gff for BS19543.complete
Subject Subject Range Query Range Percent Splice Strand
CG5267-RA 63..598 17..552 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:08 Download gff for BS19543.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16755163..16755698 17..552 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:53 Download gff for BS19543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12642668..12643203 17..552 100   Plus

BS19543.pep Sequence

Translation from 16 to 552

> BS19543.pep
MAEDSAEDQITWPDDIAEPTLESELTWPNELPVTVTNGMTFRTARTLDHF
DALRDDDEFMENPHKKVFDEFDSLEHRYHIVHPIGEEIALKRNPLPEEKY
IKQPFKFGCCHNSTYVGCAGVCPETCEYRSKYCVPLCGPPCRCKRGYVYN
IPHSACTLRSDCPKGIVQSKNGIYRVFL*

BS19543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5267-PA 178 CG5267-PA 1..178 1..178 1003 100 Plus
CG34189-PA 122 CG34189-PA 43..121 99..177 193 48.1 Plus
Acp62F-PA 115 CG1262-PA 31..97 106..171 181 50.7 Plus
CG33259-PA 119 CG33259-PA 24..88 106..169 172 50.8 Plus