Clone BS19544 Report

Search the DGRC for BS19544

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG31957-RA
Protein status:BS19544.pep: full length peptide match
Sequenced Size:512

Clone Sequence Records

BS19544.complete Sequence

512 bp assembled on 2011-01-27

GenBank Submission: KX804953

> BS19544.complete
GAAGTTATCAGTCGACATGCACCGATCACACCCGAGTATCAGTCGTCGCA
AGCATCTCATGAAGGAGATGATGGAGGACGACTACGCGCTGCCCACAGAA
ACTCAGCAGATTGCGCGGGTCATCAGCAGTCGGGGCAACAATCTCCACGA
GGTGGAGACCGTGGACGAAACGTTCCTTGTTTCGATGCCCAACAAATTCC
GCAAGAGCATGTGGGTGAAACGTGGCGACTTTCTGCTGGTCGAACCGATT
GAGGAGGGCGATAAAGTCAAAGCCGAGATTTGCAAAATACTCACACCCGA
ACATATAAAGGAATACACAAAAGCTGCAATTTGGCCGGATAAATTCACAA
AGAAACCTGTACAGGAGGAAGCCACCAGCCAAAACAAAGACGACTCCGAT
TTCGAGGATGATCTCCTGCCCAATACAAATCGGCCTGTAAATCGCGATTC
CTCCGACGAAGAGGAAGATGAGGAAACATCCAGCGAAGAGGACTGAAAGC
TTTCTAGACCAT

BS19544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31957-RB 480 CG31957-PB 1..480 17..496 2400 100 Plus
CG31957-RA 480 CG31957-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31957-RB 885 CG31957-RB 124..604 17..497 2405 100 Plus
CG31957-RA 676 CG31957-RA 124..604 17..497 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3871552..3871870 497..179 1595 100 Minus
2L 23513712 2L 3872173..3872335 179..17 815 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:45:58 has no hits.

BS19544.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:58 Download gff for BS19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG31957-RA 124..602 17..495 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:57 Download gff for BS19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG31957-RA 124..602 17..495 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:12 Download gff for BS19544.complete
Subject Subject Range Query Range Percent Splice Strand
CG31957-RA 124..602 17..495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:12 Download gff for BS19544.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3872173..3872335 17..179 100   Minus
2L 3871554..3871869 180..495 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:57 Download gff for BS19544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3872173..3872335 17..179 100   Minus
arm_2L 3871554..3871869 180..495 100 <- Minus

BS19544.pep Sequence

Translation from 16 to 495

> BS19544.pep
MHRSHPSISRRKHLMKEMMEDDYALPTETQQIARVISSRGNNLHEVETVD
ETFLVSMPNKFRKSMWVKRGDFLLVEPIEEGDKVKAEICKILTPEHIKEY
TKAAIWPDKFTKKPVQEEATSQNKDDSDFEDDLLPNTNRPVNRDSSDEEE
DEETSSEED*

BS19544.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31957-PB 159 CG31957-PB 1..159 1..159 833 100 Plus
CG31957-PA 159 CG31957-PA 1..159 1..159 833 100 Plus