Clone BS19545 Report

Search the DGRC for BS19545

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG4627-RA
Protein status:BS19545.pep: full length peptide match
Sequenced Size:647

Clone Sequence Records

BS19545.complete Sequence

647 bp assembled on 2011-01-27

GenBank Submission: KX805217

> BS19545.complete
GAAGTTATCAGTCGACATGCTGGAGCTGCTGTGCCGGGTCAGTCCTGCAA
GATTGCCATGGAGAAGCTGCATGTCCCTAGCCATTCAGCCGGCACAGAGA
CGCCGCTTTGCAACAGAGGCTGCCGGAAAAAGAACGGAAACCGAAAAATC
TGCATTCACTGAATGGCGCACCGTCTATAGTATGCCGGGCATACGGCTCG
TGGCCGCATTAAGTAGGTTGAAAGTCTACCAGGCTGTCATCACGGCCGCC
GGAACGCCCATTGTCTTCGCCCTGGGCAGCGCCGGGCAACTCAGCACGGA
TGCACTGGCCATCTATGCCGCCATTGGAGTCACTGGCCTGATCACCCTCA
CACTAGCCAGCTACGCGTCCTCAAATCTCGTGGGCTTCATCTACGTGAAC
GAGGAACAGGATCTGCTCAAGCTGGCCTACGTAGACTTCTGGGGACGGCG
ACAGGAGACACTCATTGAAACCGAGGATCTGCTGCCGAGCTGGGAGCAGG
GAAGTCCGTCTCGACTCAGATTCGTTTCGCCCATTTGCTTGCGCAGCGAT
TCCAAAAGGCGCTACAAACTCCTTAATCGCTTCGGTCATGTCAGCGATCG
CCAGTTGTTTGAGGGTCTCTTTGGAAATTGAAAGCTTTCTAGACCAT

BS19545.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4627-RA 615 CG4627-PA 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4627-RA 988 CG4627-RA 196..811 17..632 3080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13214969..13215583 18..632 3075 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:46:03 has no hits.

BS19545.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:59 Download gff for BS19545.complete
Subject Subject Range Query Range Percent Splice Strand
CG4627-RA 169..782 17..630 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:00 Download gff for BS19545.complete
Subject Subject Range Query Range Percent Splice Strand
CG4627-RA 196..809 17..630 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:14 Download gff for BS19545.complete
Subject Subject Range Query Range Percent Splice Strand
CG4627-RA 196..809 17..630 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:14 Download gff for BS19545.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13214967..13215581 17..630 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:00 Download gff for BS19545.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9102472..9103086 17..630 99   Plus

BS19545.pep Sequence

Translation from 16 to 630

> BS19545.pep
MLELLCRVSPARLPWRSCMSLAIQPAQRRRFATEAAGKRTETEKSAFTEW
RTVYSMPGIRLVAALSRLKVYQAVITAAGTPIVFALGSAGQLSTDALAIY
AAIGVTGLITLTLASYASSNLVGFIYVNEEQDLLKLAYVDFWGRRQETLI
ETEDLLPSWEQGSPSRLRFVSPICLRSDSKRRYKLLNRFGHVSDRQLFEG
LFGN*

BS19545.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4627-PA 204 CG4627-PA 1..204 1..204 1033 100 Plus