Clone BS19547 Report

Search the DGRC for BS19547

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG31053-RA
Protein status:BS19547.pep: full length peptide match
Sequenced Size:692

Clone Sequence Records

BS19547.complete Sequence

692 bp assembled on 2011-01-27

GenBank Submission: KX804909

> BS19547.complete
GAAGTTATCAGTCGACATGTTTCGAATCCACTGCAACAAATGCTTTCGAC
GCCGCAACGTCGAGCCAACGTTGATCTTCCACATGACCCAGTGCCAACAC
GTCCTCTGCGCCTCCTGTCTGAGCGAATCCTCGACAGATAAGAAGTGCCC
ACTGTGCAAACGGGATCTGCGAGCGATTCCGATCGACAAAAACTTGCCTC
CAAACGTGGCCCAATACTTTGAGGATCCGCTTCGATTCCAGCAGCTCTAC
CGCAAGATCAGCAAGTTCCAGGCCGACCAGCGGGCATCGGACAACCTGGG
ATTCTATCGCCAGATGCAGGAGCACGAGAAGAACGAGAGCCGCTTAAAGG
GCTTCTGCAAGATGGAGGCGCAGTTCAACCAGCAGATCCAAAAGGAGAAG
GAACGGATCGCCGAACTTCGCGCCTACATAAAGTACCACGAAGAGGAGGG
TCTCAAGGAGTGGCCACACGCCACGGGGGTTGAGAAGCCCTGGAGCAACC
AGGCACGTGGCCTGCGGCCCAGGACACCCTCTGTGACCACATCGGATAAT
ACCCAGTCGGATGAGCACATGACAACCTTCTGCCTGGACTCGGACATAGA
TTGCCTTGAAGAAGACGAACCCCGCCGATACGTCAAGAAAACCTTTAACG
GAAACATCAAAGATTTTCACATATAAAAGCTTTCTAGACCAT

BS19547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31053-RA 660 CG31053-PA 1..660 17..676 3300 100 Plus
CG12200-RA 636 CG12200-PA 1..413 17..429 535 75.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31053-RA 818 CG31053-RA 19..678 17..676 3300 100 Plus
CG12200-RA 993 CG12200-RA 105..517 17..429 535 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27927497..27928156 676..17 3300 100 Minus
X 23542271 X 19475167..19475579 17..429 535 75.3 Plus
Blast to na_te.dros performed on 2014-11-26 15:46:12 has no hits.

BS19547.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:00 Download gff for BS19547.complete
Subject Subject Range Query Range Percent Splice Strand
CG31053-RA 25..676 23..674 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:03 Download gff for BS19547.complete
Subject Subject Range Query Range Percent Splice Strand
CG31053-RA 25..676 23..674 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:16 Download gff for BS19547.complete
Subject Subject Range Query Range Percent Splice Strand
CG31053-RA 25..676 23..674 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:16 Download gff for BS19547.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27927499..27928150 23..674 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:03 Download gff for BS19547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23753221..23753872 23..674 100   Minus

BS19547.pep Sequence

Translation from 16 to 675

> BS19547.pep
MFRIHCNKCFRRRNVEPTLIFHMTQCQHVLCASCLSESSTDKKCPLCKRD
LRAIPIDKNLPPNVAQYFEDPLRFQQLYRKISKFQADQRASDNLGFYRQM
QEHEKNESRLKGFCKMEAQFNQQIQKEKERIAELRAYIKYHEEEGLKEWP
HATGVEKPWSNQARGLRPRTPSVTTSDNTQSDEHMTTFCLDSDIDCLEED
EPRRYVKKTFNGNIKDFHI*

BS19547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31053-PA 219 CG31053-PA 1..219 1..219 1193 100 Plus
CG12200-PA 211 CG12200-PA 1..211 1..219 555 50 Plus