BS19554.complete Sequence
1811 bp assembled on 2011-02-17
GenBank Submission: KX805807
> BS19554.complete
GAAGTTATCAGTCGACATGTCTTCCTCCGAGGCCGAAGTTGACATCAGTG
TGGTGTCCAGTCCGGAGCCGAGTCCTTTGGGCGCCGCTGCCCGCGACAGT
CCGCTGCTGGCCCGCTCGCCGGCCCGTTCCGCCGACGGCAGTTCGCCCCC
GGCCACGCCTACCCATCGCTCCAATACGCCCAACACGGCCGCCGGCACGC
CCACAACGTCCGCCTCGGGCGGCAATCACTTCCATCACAGTCCCAGCGGA
GGCGCTGTGCCGCCGGCGGTGTTGCACCATCATCTGCAGCACCATCTGAG
CAGCCTGGGCAGCCATCCGGTGGCGCTGCATCACGCGCTCCACACCTTTG
GCCACTTGCATCCCGCCCACGGGGCCACACATCCCGCCCTGCTGCAGCAC
GCACTCACGCCCACCGGCCAGCAGCAGCAGCAACAGTTGCAGGTGCAGCA
GCAACACCAGCAGTCGCATGTCGAGCGCCTTAGTCCGCCAATGAAGAGTC
CGGAGCGGAATGGCGGCGATGAGGTGCAAGGACACAGTCTGAACAACAAC
AACAGTAAGGCCCTCAATCACAACAACACTTGCGCCTCGGCGGCCGCAGC
GGCGGCAGCAGCAGCGGTGGCAGCGGCCAACCTGAGCAACAACAGCAACG
ACAGCAACGGGAGCAGCGGGGGCGGCGGCGGCAAGAGCACCACCGGCTCC
AACGGATTCACCAGCTTCTCCATCTCCAGCATCCTGAGTCGCAGTGAGCC
GGCCAAGAAGAACGGCGCCGCCGGACTTATCACTCCGATCCCGCAGTTGC
CGCAACCAGGAGCCGGCGGTCCACAGGATGCGGCCATGTTGTCCAGATTG
GGTTTCATATCGCAGTGGGGAGCGTTGGCCGGTCGCTATGCCGCCCTGTG
TCCGCCCGGATGGCCCTGGGCCCCCCAGCGACTGCCCTTCCACAGTCCCA
CCCATGACAGCTCCTCGACGAACACGACCGAGAATCCGCCATCGCCCACT
TCCATGAGCCCGAACAACAATAATAACAACAGCAACACCACTGCCAGCTC
GAACCAAGCCAGCAAATCGCCCTCTCACCACCCACTGCACCCCCTGTACC
ATCCCCTCGGCTCGCAACAGCAGCAGCAACAACAGCAGCAGCACCAACAG
CATCCACAGCAGCAACAGCATCCACAGCAGCAGCAGCAGCAGCATCCTCA
CCAGCCCACCACGCCCACCAGCAGCAGCAGCAGCGGAGGCGGCAGCAGTC
TGACCCACCATCCGCATCCGCATCTGACCGGCTCACATGGCGGATACTTG
CTGCCCAGCAGTTCCAACGAATCCGACGAGGAGGGCGAGGAGATCATCGA
GGAGGATGATGGTACGGACGGACCCTCCGACAGCTCCTCGCCACATGGTG
ATGGCAACTCGAAGAGAAAGAAGAAAACCAGAACTGTATTCTCGCGCGCC
CAGGTCTTCCAGCTGGAGTCCACGTTCGATCTGAAGCGCTACCTTAGCTC
CTCGGAACGAGCAGGTCTGGCCGCCTCGCTCCGGCTGACCGAGACGCAGG
TGAAGATCTGGTTCCAGAATCGCCGCAATAAGTGGAAACGCCAGCTGGCC
GCCGAACTGGAGGCGGCCAATATGGCCAACATGGCGCATGCAGCACAGAG
ATTGGTGCGTGTGCCGGTGCTCTACCACGATGGCACAACGGCCGGATTTG
TGCCACCGCCGCCGCCGCACCACCACCCCATGCAGTACTATGCGGCGGCA
CGCAACACCAGCCCCCCGAGACCCCCGCTCTCGTCGCTGGTATAGAAGCT
TTCTAGACCAT
BS19554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmx-RE | 1779 | CG43748-PE | 1..1779 | 17..1795 | 8895 | 100 | Plus |
| Hmx-RD | 2157 | CG43748-PD | 1..1779 | 17..1795 | 8895 | 100 | Plus |
| Hmx-RC | 1779 | CG43748-PC | 1..1779 | 17..1795 | 8895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmx-RE | 3384 | CG43748-RE | 435..2213 | 17..1795 | 8895 | 100 | Plus |
| Hmx-RD | 2691 | CG43748-RD | 435..2213 | 17..1795 | 8895 | 100 | Plus |
| Hmx-RC | 2691 | CG43748-RC | 435..2213 | 17..1795 | 8895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17567087..17567926 | 956..1795 | 4200 | 100 | Plus |
| 3R | 32079331 | 3R | 17559364..17560193 | 17..846 | 4150 | 100 | Plus |
| 3R | 32079331 | 3R | 17565451..17565563 | 844..956 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 29564309..29564354 | 1524..1569 | 200 | 95.7 | Plus |
| 3L | 28110227 | 3L | 7950796..7950853 | 1534..1591 | 200 | 89.7 | Plus |
Blast to na_te.dros performed 2014-11-27 08:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2989 | 542..1203 | 329 | 53.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2925 | 1059..1258 | 289 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6941 | 522..733 | 267 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2936 | 1077..1248 | 232 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6513..6857 | 399..733 | 230 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6879 | 588..743 | 218 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6933 | 571..777 | 214 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2550 | 940..1165 | 206 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..7085 | 1003..1255 | 176 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6838 | 635..744 | 171 | 62.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1151 | 597..667 | 163 | 71.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2902 | 420..743 | 153 | 54.7 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 610..703 | 679..588 | 141 | 62.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1522..1591 | 635..703 | 140 | 68.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1074..1164 | 635..725 | 140 | 61.5 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 946..1032 | 735..652 | 132 | 69.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2658 | 600..667 | 121 | 66.2 | Plus |
BS19554.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:29 Download gff for
BS19554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmx-RC | 435..2213 | 17..1795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:50 Download gff for
BS19554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmx-RC | 435..2213 | 17..1795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:19 Download gff for
BS19554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmx-RC | 435..2213 | 17..1795 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:19 Download gff for
BS19554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17559364..17560193 | 17..846 | 100 | -> | Plus |
| 3R | 17565454..17565563 | 847..956 | 100 | -> | Plus |
| 3R | 17567088..17567926 | 957..1795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:50 Download gff for
BS19554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13385086..13385915 | 17..846 | 100 | -> | Plus |
| arm_3R | 13391176..13391285 | 847..956 | 100 | -> | Plus |
| arm_3R | 13392810..13393648 | 957..1795 | 100 | | Plus |
BS19554.pep Sequence
Translation from 16 to 1794
> BS19554.pep
MSSSEAEVDISVVSSPEPSPLGAAARDSPLLARSPARSADGSSPPATPTH
RSNTPNTAAGTPTTSASGGNHFHHSPSGGAVPPAVLHHHLQHHLSSLGSH
PVALHHALHTFGHLHPAHGATHPALLQHALTPTGQQQQQQLQVQQQHQQS
HVERLSPPMKSPERNGGDEVQGHSLNNNNSKALNHNNTCASAAAAAAAAA
VAAANLSNNSNDSNGSSGGGGGKSTTGSNGFTSFSISSILSRSEPAKKNG
AAGLITPIPQLPQPGAGGPQDAAMLSRLGFISQWGALAGRYAALCPPGWP
WAPQRLPFHSPTHDSSSTNTTENPPSPTSMSPNNNNNNSNTTASSNQASK
SPSHHPLHPLYHPLGSQQQQQQQQQHQQHPQQQQHPQQQQQQHPHQPTTP
TSSSSSGGGSSLTHHPHPHLTGSHGGYLLPSSSNESDEEGEEIIEEDDGT
DGPSDSSSPHGDGNSKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAG
LAASLRLTETQVKIWFQNRRNKWKRQLAAELEAANMANMAHAAQRLVRVP
VLYHDGTTAGFVPPPPPHHHPMQYYAAARNTSPPRPPLSSLV*
BS19554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmx-PE | 592 | CG43748-PE | 1..592 | 1..592 | 3158 | 100 | Plus |
| Hmx-PD | 718 | CG43748-PD | 1..592 | 1..592 | 3158 | 100 | Plus |
| Hmx-PC | 592 | CG43748-PC | 1..592 | 1..592 | 3158 | 100 | Plus |
| unpg-PA | 485 | CG1650-PA | 107..404 | 289..554 | 246 | 28.7 | Plus |
| C15-PA | 339 | CG7937-PA | 50..309 | 313..567 | 242 | 28.6 | Plus |
