Clone BS19555 Report

Search the DGRC for BS19555

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG10584-RA
Protein status:BS19555.pep: full length peptide match
Sequenced Size:857

Clone Sequence Records

BS19555.complete Sequence

857 bp assembled on 2011-01-27

GenBank Submission: KX803629

> BS19555.complete
GAAGTTATCAGTCGACATGTTCACGGTCACGTCGGAGATCTACGGAGAGA
ACAACTACCAGACGACCCGCGATGGAGGTAAGGTGTTGTCGAAGTTCCGT
TTCGTCTATCCGGAGGAGAAGCTGGCGGGGATTAGGACGGATAAAGACGG
CGACCTTGAGGTGCCAAGGCCGAAACGTGGCGTGATCGAATTGGAACATT
CCGAGGCCACGGAGCTCCGGCTGGTGGGCTTGCAGGTGTGGCGAGGAGCC
CTTCTTCTGGCAGACTACCTTTTCTCCAAAAAGGATGAGTTTTCCCAGAA
AACCCTAATGGAACTGGGAGCTGGTGTCGGCCTGACCAGCATTGCCGCCG
GAATACACAATAACGGAAGGATCTATTGCACGGATGTGGACCTGGGATGC
ATACTGAAGCTGATCCGCGGCAATGTCCAAAGAAATTCAAAACTCCTCCG
CGCTACGATATCAGTTCTGGAGTTTGATTTTCTCGCCTCAAAAGAGGATC
ACTCGCAGGATCTGCTGGAGGCCATAGACAATAGCGATATAATCCTAGCT
GCCGATGTCATCTACTGTGATACGCTAACCGATGCCTTCATCTGCGTCTT
GGATAACCTCCTGGATCGAGGTCGCCAAACTGGGAGACCCAAAACGATAT
ACATGGCACTGGAGAAGCGCTATGTGTTCACACTGGAGGATTGCGATTCG
GTGGCTCCCATGTATGAGTACCTCATCCGGCAGACGGTGAACAAGCCGTG
GATCATGGAGCACCTGCCTCTGGATTTCCCCCAGTATTTCGAGTACGATC
GCTGCAAGCAACTGGTTCTGATGAAGATCATCAGTCGTTAAAAGCTTTCT
AGACCAT

BS19555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10584-RA 825 CG10584-PA 1..825 17..841 4125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10584-RA 1081 CG10584-RA 111..938 16..843 4140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21030423..21031250 843..16 4140 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:40:33 has no hits.

BS19555.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:47 Download gff for BS19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10584-RA 117..934 22..839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:36 Download gff for BS19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10584-RA 117..934 22..839 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:14 Download gff for BS19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10584-RA 117..934 22..839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:14 Download gff for BS19555.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21030427..21031244 22..839 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:36 Download gff for BS19555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21023527..21024344 22..839 100   Minus

BS19555.pep Sequence

Translation from 16 to 840

> BS19555.pep
MFTVTSEIYGENNYQTTRDGGKVLSKFRFVYPEEKLAGIRTDKDGDLEVP
RPKRGVIELEHSEATELRLVGLQVWRGALLLADYLFSKKDEFSQKTLMEL
GAGVGLTSIAAGIHNNGRIYCTDVDLGCILKLIRGNVQRNSKLLRATISV
LEFDFLASKEDHSQDLLEAIDNSDIILAADVIYCDTLTDAFICVLDNLLD
RGRQTGRPKTIYMALEKRYVFTLEDCDSVAPMYEYLIRQTVNKPWIMEHL
PLDFPQYFEYDRCKQLVLMKIISR*

BS19555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10584-PA 274 CG10584-PA 1..274 1..274 1418 100 Plus