BS19558.complete Sequence
806 bp assembled on 2011-01-27
GenBank Submission: KX804243
> BS19558.complete
GAAGTTATCAGTCGACATGTGTGTGAGAAGCTCACTGGGCAGTGTGATTT
TAATTTACTTTGTCATCTTGCTTCGTTTGGTCAACTTGGTGCTGGCCCAG
AACGAAGGGAATATATCGGAATCGACGGTGGCCACGGGCCGCGAGGAGTG
CGGCAGCACGCAGAAAATGGTGGACGAGTGCTTCAAGGATCTGCCGCCGC
ATCTAATGGATTTCCTACAGAACACGAAAATCGTCATCAGCAAAAAGGAG
ATCACCGCCAAGTGCAACATATTCAACCGTGGCATGAGGTGCTTCGATAC
TTACTCCAAGCGTTGCCTGGACGATCGAAAGATGGGCACGTTTAAGAATA
ATGTGGAGGGAGCTCGGCGATTTTTCTACAAGTTCTGCGGCGACGCCGAT
TTTCAGCGTGACTATCTGAGGCACAAGGACTGCTTTGCATACATCCAACT
GGACTGGGTCACCTGCACCACCGAGTTCGAGAACATCCTTAGTGAAGAGG
TGCACGACGAAAGGCGCAACGCCAGCGAAAAGTTCCTCGAATTCTGCTGT
GCCCGCTACGCGTACGAGAACTGCATCTACAACAGTGCCCGCTTCAAGTG
CTACAAAAACTCGGCGGAGTTTGCCCGCGAGACGGCCAAAATGCTGTCGG
ATGAGAAGCACTTTAGGAACTGTGCCGTCCTCCAGAACATCTGTGCCCAC
GACGCCGCCGTGGCATTGGCCCAGTGGCACTGGATGGCGACGCCGATGAT
GCTGCTCCTGATGCGGCTGGTGGTGCGGATCTGGGCGTAAAAGCTTTCTA
GACCAT
BS19558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13408-RA | 774 | CG13408-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13408-RA | 1189 | CG13408-RA | 81..855 | 17..791 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22080462..22080712 | 17..267 | 1255 | 100 | Plus |
3R | 32079331 | 3R | 22082897..22083139 | 549..791 | 1215 | 100 | Plus |
3R | 32079331 | 3R | 22081802..22081949 | 263..410 | 725 | 99.3 | Plus |
3R | 32079331 | 3R | 22082248..22082387 | 410..549 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:38:56 has no hits.
BS19558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:44 Download gff for
BS19558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13408-RA | 81..852 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:56 Download gff for
BS19558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13408-RA | 81..852 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:36 Download gff for
BS19558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13408-RA | 81..852 | 17..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:36 Download gff for
BS19558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22082249..22082387 | 411..549 | 100 | -> | Plus |
3R | 22082898..22083136 | 550..788 | 100 | | Plus |
3R | 22080462..22080712 | 17..267 | 100 | -> | Plus |
3R | 22081807..22081949 | 268..410 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:56 Download gff for
BS19558.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17906184..17906434 | 17..267 | 100 | -> | Plus |
arm_3R | 17907529..17907671 | 268..410 | 100 | -> | Plus |
arm_3R | 17907971..17908109 | 411..549 | 100 | -> | Plus |
arm_3R | 17908620..17908858 | 550..788 | 100 | | Plus |
BS19558.pep Sequence
Translation from 16 to 789
> BS19558.pep
MCVRSSLGSVILIYFVILLRLVNLVLAQNEGNISESTVATGREECGSTQK
MVDECFKDLPPHLMDFLQNTKIVISKKEITAKCNIFNRGMRCFDTYSKRC
LDDRKMGTFKNNVEGARRFFYKFCGDADFQRDYLRHKDCFAYIQLDWVTC
TTEFENILSEEVHDERRNASEKFLEFCCARYAYENCIYNSARFKCYKNSA
EFARETAKMLSDEKHFRNCAVLQNICAHDAAVALAQWHWMATPMMLLLMR
LVVRIWA*
BS19558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13408-PA | 257 | CG13408-PA | 1..257 | 1..257 | 1381 | 100 | Plus |
CG9896-PA | 253 | CG9896-PA | 23..195 | 36..205 | 169 | 23.7 | Plus |