Clone BS19558 Report

Search the DGRC for BS19558

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG13408-RA
Protein status:BS19558.pep: full length peptide match
Sequenced Size:806

Clone Sequence Records

BS19558.complete Sequence

806 bp assembled on 2011-01-27

GenBank Submission: KX804243

> BS19558.complete
GAAGTTATCAGTCGACATGTGTGTGAGAAGCTCACTGGGCAGTGTGATTT
TAATTTACTTTGTCATCTTGCTTCGTTTGGTCAACTTGGTGCTGGCCCAG
AACGAAGGGAATATATCGGAATCGACGGTGGCCACGGGCCGCGAGGAGTG
CGGCAGCACGCAGAAAATGGTGGACGAGTGCTTCAAGGATCTGCCGCCGC
ATCTAATGGATTTCCTACAGAACACGAAAATCGTCATCAGCAAAAAGGAG
ATCACCGCCAAGTGCAACATATTCAACCGTGGCATGAGGTGCTTCGATAC
TTACTCCAAGCGTTGCCTGGACGATCGAAAGATGGGCACGTTTAAGAATA
ATGTGGAGGGAGCTCGGCGATTTTTCTACAAGTTCTGCGGCGACGCCGAT
TTTCAGCGTGACTATCTGAGGCACAAGGACTGCTTTGCATACATCCAACT
GGACTGGGTCACCTGCACCACCGAGTTCGAGAACATCCTTAGTGAAGAGG
TGCACGACGAAAGGCGCAACGCCAGCGAAAAGTTCCTCGAATTCTGCTGT
GCCCGCTACGCGTACGAGAACTGCATCTACAACAGTGCCCGCTTCAAGTG
CTACAAAAACTCGGCGGAGTTTGCCCGCGAGACGGCCAAAATGCTGTCGG
ATGAGAAGCACTTTAGGAACTGTGCCGTCCTCCAGAACATCTGTGCCCAC
GACGCCGCCGTGGCATTGGCCCAGTGGCACTGGATGGCGACGCCGATGAT
GCTGCTCCTGATGCGGCTGGTGGTGCGGATCTGGGCGTAAAAGCTTTCTA
GACCAT

BS19558.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13408-RA 774 CG13408-PA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13408-RA 1189 CG13408-RA 81..855 17..791 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22080462..22080712 17..267 1255 100 Plus
3R 32079331 3R 22082897..22083139 549..791 1215 100 Plus
3R 32079331 3R 22081802..22081949 263..410 725 99.3 Plus
3R 32079331 3R 22082248..22082387 410..549 700 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:38:56 has no hits.

BS19558.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:44 Download gff for BS19558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13408-RA 81..852 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:56 Download gff for BS19558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13408-RA 81..852 17..788 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:36 Download gff for BS19558.complete
Subject Subject Range Query Range Percent Splice Strand
CG13408-RA 81..852 17..788 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:36 Download gff for BS19558.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22082249..22082387 411..549 100 -> Plus
3R 22082898..22083136 550..788 100   Plus
3R 22080462..22080712 17..267 100 -> Plus
3R 22081807..22081949 268..410 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:56 Download gff for BS19558.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17906184..17906434 17..267 100 -> Plus
arm_3R 17907529..17907671 268..410 100 -> Plus
arm_3R 17907971..17908109 411..549 100 -> Plus
arm_3R 17908620..17908858 550..788 100   Plus

BS19558.pep Sequence

Translation from 16 to 789

> BS19558.pep
MCVRSSLGSVILIYFVILLRLVNLVLAQNEGNISESTVATGREECGSTQK
MVDECFKDLPPHLMDFLQNTKIVISKKEITAKCNIFNRGMRCFDTYSKRC
LDDRKMGTFKNNVEGARRFFYKFCGDADFQRDYLRHKDCFAYIQLDWVTC
TTEFENILSEEVHDERRNASEKFLEFCCARYAYENCIYNSARFKCYKNSA
EFARETAKMLSDEKHFRNCAVLQNICAHDAAVALAQWHWMATPMMLLLMR
LVVRIWA*

BS19558.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13408-PA 257 CG13408-PA 1..257 1..257 1381 100 Plus
CG9896-PA 253 CG9896-PA 23..195 36..205 169 23.7 Plus