BS19560.complete Sequence
1031 bp assembled on 2011-01-27
GenBank Submission: KX802117
> BS19560.complete
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGGACGCATTCGAGCCAGCTCCATCGAGATGCGTCTGCTGGAGAT
GCAGCGAAAGTTGTCAGCCATTGCCGAAATACCGAAAATCCTGTGCTCCA
CTTTGGCCACCGTGTCGCAGAATTTTGGCCGAATGAGTGAATCGGAGGTG
GATGAGGATGACGTCGGGGAGGAGGAGGCCTATGTGCAGCGGAAGTTCTC
CTACGACGAGGATGCCCTTGACTTTGAGCTGAGGAACGGGGAACAGGCAG
GTGACACTGACAGTGATGAGGAAGATTTGGTGTTGGTTCGGGAGGAGGAT
GCTGAGGACGTGGATGTACCGAAAGGTGCCAAGCAATCAAAGCTGCTGAA
GGATGTCACGCCGGAATCGGATTATGCATCGGAAGCCAATTATCCGGCAA
ATGAGGCGAGCGATGACACGGAATCCGACGATGAGGATGAGCCGGGCAGC
ACGGTATATTTCATGAAACTGCCAGCGGCCGCCGCCGAGGATACGTATTC
TTCTACGGAGGACGAGGATGACAGCGATTTCCTGAACACCACCTACACGT
GGAATCTCCGCAATGTGCCCAAGCTGCGAATTAACGATGCCGAGGCCGAA
GGTGAACTGACACTGGGACATCAGGCGCGGGAGGTGCCTCAGCAGGAGCA
GCCACAGGAGAAGCAGCCTTGTCTGGAACCGGAGCCACCGAAGGTGCGCC
CAGCCACGCCCACACCGAAGGCTCCACCTCAAGAATCCGCCGAGGGGCAG
ACACAAAAGTTGCTATTCAGACTGGATAAACTGGAACGATCCTGGCCCTG
GGCAGACCGCGAGAAGATCATATACAAGCAATCCACTTGCCATTTGGTGC
CACGAAAGCCACTGGGATTGGTGGGACAGCGAATGCAGCTGCTGCTGAAG
GACAAAAAGGAGTGAAAGCTTTCTAGACCAT
BS19560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-RE | 1359 | CG42319-PE | 359..1359 | 15..1015 | 5005 | 100 | Plus |
| CG42319-RF | 999 | CG42319-PF | 1..999 | 17..1015 | 4995 | 100 | Plus |
| CG42319-RD | 756 | CG42319-PD | 359..451 | 15..107 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-RF | 2046 | CG42319-RF | 250..1250 | 15..1015 | 5005 | 100 | Plus |
| CG42319-RE | 2682 | CG17042-RA | 886..1886 | 15..1015 | 5005 | 100 | Plus |
| CG42319-RD | 1466 | CG42319-RD | 886..978 | 15..107 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13264369..13265121 | 107..859 | 3765 | 100 | Plus |
| 2R | 25286936 | 2R | 13262906..13262998 | 16..108 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 13265453..13265540 | 928..1015 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 13265319..13265389 | 858..928 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:39:33 has no hits.
BS19560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:46 Download gff for
BS19560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RF | 223..1220 | 17..1014 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:14 Download gff for
BS19560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RE | 888..1885 | 17..1014 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:50 Download gff for
BS19560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42319-RE | 888..1885 | 17..1014 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:50 Download gff for
BS19560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13265453..13265539 | 928..1014 | 100 | | Plus |
| 2R | 13262907..13262997 | 17..107 | 100 | -> | Plus |
| 2R | 13264370..13265121 | 108..859 | 100 | -> | Plus |
| 2R | 13265321..13265388 | 860..927 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:14 Download gff for
BS19560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9150412..9150502 | 17..107 | 100 | -> | Plus |
| arm_2R | 9151875..9152626 | 108..859 | 100 | -> | Plus |
| arm_2R | 9152826..9152893 | 860..927 | 100 | -> | Plus |
| arm_2R | 9152958..9153044 | 928..1014 | 100 | | Plus |
BS19560.pep Sequence
Translation from 16 to 1014
> BS19560.pep
MEEDDPMGQFEAGEEKSIVMRVPKPLPPPSGRIRASSIEMRLLEMQRKLS
AIAEIPKILCSTLATVSQNFGRMSESEVDEDDVGEEEAYVQRKFSYDEDA
LDFELRNGEQAGDTDSDEEDLVLVREEDAEDVDVPKGAKQSKLLKDVTPE
SDYASEANYPANEASDDTESDDEDEPGSTVYFMKLPAAAAEDTYSSTEDE
DDSDFLNTTYTWNLRNVPKLRINDAEAEGELTLGHQAREVPQQEQPQEKQ
PCLEPEPPKVRPATPTPKAPPQESAEGQTQKLLFRLDKLERSWPWADREK
IIYKQSTCHLVPRKPLGLVGQRMQLLLKDKKE*
BS19560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42319-PF | 332 | CG42319-PF | 1..332 | 1..332 | 1723 | 100 | Plus |
| CG42319-PE | 452 | CG17042-PA | 121..452 | 1..332 | 1723 | 100 | Plus |
| CG42319-PC | 131 | CG17041-PC | 1..30 | 1..30 | 160 | 100 | Plus |
| CG42319-PB | 131 | CG17041-PB | 1..30 | 1..30 | 160 | 100 | Plus |
| CG42319-PA | 131 | CG17041-PA | 1..30 | 1..30 | 160 | 100 | Plus |
