BS19561.complete Sequence
848 bp assembled on 2011-01-27
GenBank Submission: KX802123
> BS19561.complete
GAAGTTATCAGTCGACATGCTCCTAATTGGATTACTAATGCTACTCCATG
CCGGCCTCCAAGGAGCCCAGTGTGTTGCCTTCTACACGGAAAAACCCTCC
TATATTGAGTCCTGCAAGATTTATGAACCGGAGTTCACCAAGTGCTCAAC
TCGTTCAATACAGGCATTTATGAACCAGCTCGTCAAAGGTGTGCCCGAAA
TAGAGGAATCCTTTGGACCCATCGATCCCATGAGGCAGGAACAGCTGGTG
TTCAAGCAGGATAACAGCGACGTGGCCACCCTTTCCGCCAATCTTACGGA
TATGCTGATCAGGGGCTTTGGCAAAATGCTGATCAAGGAGAGCAAAGTCA
GCAAAAAGGATTTCAGCTGGCTAACTAAGATCTACCTGCCCCAAATGCGA
ATAGATGGTCACTACAAAATGGTCGGTCGCATTTTGCTCGTGCCTCTGCA
GGGAAATGGAAAAATAGTCATGGAAATAGATGATCTGGACATACTGATGA
CCACCAAAACACGCCTCTACGAGAAGGGCGGCTATACATTTTACAACGTG
ACATCCGTGAAGGTAAAAGTGGACGTCGGCAAAGTTCGCACCAGATTGGA
TAACCTCTTCAACGGGCACAGCAAGGAGGTGGAAGATAGCACCAATCAGT
TCTTTAACGACAATTGGAAGGATGTCTTCGAGGCACTGCGTCCGCTGGTG
GTTGAAACCGTGGAAAGAACGCTACTAGATCTACTCCACAAGACATTTGC
CCTGTTTCCGGCCAGCTTCTTTGTGGAGGACATACCCACCTCCTTAACCT
TGTATGGTCGCAAGTCACACATGATCACTTGAAAGCTTTCTAGACCAT
BS19561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17189-RA | 795 | CG17189-PA | 1..795 | 38..832 | 3960 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17189-RA | 995 | CG17189-RA | 71..890 | 16..835 | 4085 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27102455..27102812 | 478..835 | 1790 | 100 | Plus |
| 3R | 32079331 | 3R | 27101823..27101981 | 187..345 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 27102263..27102396 | 346..479 | 655 | 99.3 | Plus |
| 3R | 32079331 | 3R | 27101673..27101768 | 96..191 | 480 | 100 | Plus |
| 3R | 32079331 | 3R | 27101476..27101555 | 16..95 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:41:32 has no hits.
BS19561.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:49 Download gff for
BS19561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17189-RA | 72..886 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:04 Download gff for
BS19561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17189-RA | 72..886 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:38 Download gff for
BS19561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17189-RA | 72..886 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:38 Download gff for
BS19561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27101673..27101765 | 96..188 | 100 | -> | Plus |
| 3R | 27101825..27101981 | 189..345 | 100 | -> | Plus |
| 3R | 27102263..27102396 | 346..479 | 99 | -> | Plus |
| 3R | 27102457..27102808 | 480..831 | 100 | | Plus |
| 3R | 27101477..27101555 | 17..95 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:04 Download gff for
BS19561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22927199..22927277 | 17..95 | 100 | -> | Plus |
| arm_3R | 22927395..22927487 | 96..188 | 100 | -> | Plus |
| arm_3R | 22927547..22927703 | 189..345 | 100 | -> | Plus |
| arm_3R | 22927985..22928118 | 346..479 | 99 | -> | Plus |
| arm_3R | 22928179..22928530 | 480..831 | 100 | | Plus |
BS19561.pep Sequence
Translation from 16 to 831
> BS19561.pep
MLLIGLLMLLHAGLQGAQCVAFYTEKPSYIESCKIYEPEFTKCSTRSIQA
FMNQLVKGVPEIEESFGPIDPMRQEQLVFKQDNSDVATLSANLTDMLIRG
FGKMLIKESKVSKKDFSWLTKIYLPQMRIDGHYKMVGRILLVPLQGNGKI
VMEIDDLDILMTTKTRLYEKGGYTFYNVTSVKVKVDVGKVRTRLDNLFNG
HSKEVEDSTNQFFNDNWKDVFEALRPLVVETVERTLLDLLHKTFALFPAS
FFVEDIPTSLTLYGRKSHMIT*
BS19561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17189-PA | 264 | CG17189-PA | 1..264 | 8..271 | 1365 | 100 | Plus |
| CG14259-PA | 289 | CG14259-PA | 36..282 | 20..266 | 885 | 65.2 | Plus |
| CG14457-PB | 271 | CG14457-PB | 24..265 | 22..265 | 559 | 43.9 | Plus |
| CG14457-PC | 270 | CG14457-PC | 24..264 | 23..265 | 554 | 43.2 | Plus |
| CG14457-PA | 144 | CG14457-PA | 1..138 | 127..265 | 373 | 48.9 | Plus |
