BS19562.complete Sequence
968 bp assembled on 2011-01-27
GenBank Submission: KX805820
> BS19562.complete
GAAGTTATCAGTCGACATGTGGGTAAGCCTGGTTAGAAATCACAGCAGTT
GGGGAATTAGCAAAATGGGCAAATCGCAAAATAATACTGGTTCGCTTTTG
CTACTGATTATACTGGGCATTTCTCTGGGAGATTCCATGCCCCTGGAGGA
TATGGACTCCCAGGAAATGATTGACTTGACAGATCTTGGAGATACTCTGT
TCGGTAATCCGGACGTGGAGACGACTGGAGCTTTGGTTGAGGCACTCGGT
GTGGAATCCCCGCTGAATCCCGAGGAGCTGGGAACCTACCACGAAGGTGA
CATCCTGATTCCACTGAGCTACAGGGACGCCCGATTCAATGGCACTCGTA
ATGGCATTTTGGCGCTGAGTTCCCGCTGGCCGGGCGGCGTTGTGCCCTAC
GAGATCAAAGGTCCTTTTACCAGCCAGGAATTGGGGAATATTAACCACGC
TTTTAAGGAATACCACACCAAAACATGCGTGCGCTTCAAGCCCAGGACCA
CCGAAAAGGATTACATCTCCATTGGTAGCGGAAAGTCTGGCTGCTGGAGT
AGCATTGGGCGCTTAGGTGGTCGCCAGGAAGTGAATCTGCAGTCGCCCAA
CTGCTTGCGTACATACGGCACTCCCATTCACGAGCTGATGCACGCCCTGG
GCTTCTTCCATGAGCAGAATCGTCACGAACGTGACTCCTATGTGCGCGTG
ATGAAGGACAACATCAAGCCCGAGATGATGGTCAACTTCGAGAAGTCCAG
TTCCAGGACACAGTACGGCTTCGGCGTGGAATACGACTATGGCAGTGTGA
TGCACTACTCCCCCACCAGTTTCACTCGGAATGGCCAGCCCACGTTGAAG
GCACTGCGTGCCACATCCGATGCCAGCCAGATGGGTCAACGCAAGGGCTT
CTCAGCCGGAGATGTGCGCAAGATCAACGCAATGTACAAGTGCAAGGTGT
AGAAGCTTTCTAGACCAT
BS19562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5715-RA | 888 | CG5715-PA | 1..888 | 65..952 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5715-RA | 978 | CG5715-RA | 1..918 | 36..953 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24293426..24293923 | 953..456 | 2490 | 100 | Minus |
| 3R | 32079331 | 3R | 24293977..24294418 | 458..17 | 2210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:41:52 has no hits.
BS19562.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:50 Download gff for
BS19562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5715-RA | 1..917 | 36..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:12 Download gff for
BS19562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5715-RA | 1..917 | 36..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:45 Download gff for
BS19562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5715-RA | 1..917 | 36..952 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:45 Download gff for
BS19562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24293427..24293921 | 458..952 | 100 | <- | Minus |
| 3R | 24293978..24294418 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:12 Download gff for
BS19562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20119149..20119643 | 458..952 | 100 | <- | Minus |
| arm_3R | 20119700..20120140 | 17..457 | 100 | | Minus |
BS19562.pep Sequence
Translation from 16 to 951
> BS19562.pep
MWVSLVRNHSSWGISKMGKSQNNTGSLLLLIILGISLGDSMPLEDMDSQE
MIDLTDLGDTLFGNPDVETTGALVEALGVESPLNPEELGTYHEGDILIPL
SYRDARFNGTRNGILALSSRWPGGVVPYEIKGPFTSQELGNINHAFKEYH
TKTCVRFKPRTTEKDYISIGSGKSGCWSSIGRLGGRQEVNLQSPNCLRTY
GTPIHELMHALGFFHEQNRHERDSYVRVMKDNIKPEMMVNFEKSSSRTQY
GFGVEYDYGSVMHYSPTSFTRNGQPTLKALRATSDASQMGQRKGFSAGDV
RKINAMYKCKV*
BS19562.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5715-PA | 295 | CG5715-PA | 1..295 | 17..311 | 1559 | 100 | Plus |
| CG6763-PB | 354 | CG6763-PB | 49..302 | 49..309 | 722 | 54.2 | Plus |
| CG6763-PA | 354 | CG6763-PA | 49..302 | 49..309 | 722 | 54.2 | Plus |
| CG6696-PA | 324 | CG6696-PA | 84..290 | 93..308 | 433 | 43.1 | Plus |
| CG15253-PA | 253 | CG15253-PA | 28..248 | 84..309 | 404 | 39 | Plus |
