BS19571.complete Sequence
1013 bp assembled on 2011-01-27
GenBank Submission: KX805917
> BS19571.complete
GAAGTTATCAGTCGACATGAGCAGATTTGTTTATAAACTTTTACAGAGTG
CAAACCAAACTAGTTCGGGCTGCAGACGCATTTCTTTGGCTACTGTAAGA
AATGCGGAAAGCGAATCTCAAGAGGGTGCCCCTGCCCGCACAGTTCTGGT
GGAGAAGGACTCGCACATAACACTTATTGGCCTAAATCGCGAGCAGCAGC
GTAATTCCATTGATGCCAACACCGCGGAGCAGCTGACCGAAGCCATTAGC
CAATTCGAAGCGGATGATACTTCTCCAGTGGGTGTGCTCTACGGCATAGG
TGGCTCCTTTTGTGCAGGCTATGATCTGGAGGAGCTAGAGGCGGAGGCGC
AACGCGGCAGCCTCAACTTTCTGTTGCGTCACGAGGGCTCCGTCGGACCA
ACTAGGCGGCATCTCCGCAAGCCACTTGTTTGCGGCATCAGCGGTTTCTG
TGTGGCCGGTGGATTGGAACTGGCTCTAATGTGCGATCTCCGGGTGATGG
AGGACACTGCAGTTCTGGGGTTCTTCAACCGTCGCCTTGGAGTTCCCCTG
AGCGATGGTGGAACTGTGCGGCTGGCCGCTGCAGTGGGTTACTCCAATGC
CTTGGAGATCATCGCAACTGGAAGACGCATCTACTCTGGGGAGGCGCGGC
GAATCGGTTTAGTGAATCGCGTTGTGGCCACAGGCACAGCTTTAGGTCAA
GCTGTTAATCTGGCCTTTTCCATTGCCAAGTTCCCCATGGCTTCCCTAAT
GCACGACAGGAATGCTGTGCTTGAAAATGCCAATGCCTACAACAAACCAG
GATTCCATGTGGCCAGTTACAATGAGATCATGAATGTTACCTCAGATATG
ATAACAGATATGCAGGAGGGCGTGAAGCGTTTCAAGAACTCTGAAATAAA
GGGCCCCAAAACCGATTCGTGGAGCATAAAGGAGAAAACCATTCCAGATT
GGGAAAAGGCCGAAATCGAGATCGAAAAACAAAAGCAAAAGACATGAAAG
CTTTCTAGACCAT
BS19571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5611-RC | 981 | CG5611-PC | 1..981 | 17..997 | 4905 | 100 | Plus |
| CG5611-RA | 981 | CG5611-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
| CG5844-RA | 1137 | CG5844-PA | 470..548 | 465..543 | 200 | 83.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5611-RC | 1375 | CG5611-RC | 22..1002 | 17..997 | 4905 | 100 | Plus |
| CG5611-RA | 1096 | CG5611-RA | 22..1002 | 17..997 | 4905 | 100 | Plus |
| CG5844-RA | 1355 | CG5844-RA | 554..632 | 465..543 | 200 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27635162..27636039 | 894..17 | 4375 | 99.9 | Minus |
| 3R | 32079331 | 3R | 27634998..27635104 | 997..891 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 12434783..12434861 | 465..543 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:40:59 has no hits.
BS19571.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:48 Download gff for
BS19571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 22..1001 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:49 Download gff for
BS19571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 22..1001 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:23 Download gff for
BS19571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5611-RA | 22..1001 | 17..996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:23 Download gff for
BS19571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27634999..27635104 | 891..996 | 100 | <- | Minus |
| 3R | 27635166..27636039 | 17..890 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:49 Download gff for
BS19571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23460721..23460826 | 891..996 | 100 | <- | Minus |
| arm_3R | 23460888..23461761 | 17..890 | 100 | | Minus |
BS19571.pep Sequence
Translation from 16 to 996
> BS19571.pep
MSRFVYKLLQSANQTSSGCRRISLATVRNAESESQEGAPARTVLVEKDSH
ITLIGLNREQQRNSIDANTAEQLTEAISQFEADDTSPVGVLYGIGGSFCA
GYDLEELEAEAQRGSLNFLLRHEGSVGPTRRHLRKPLVCGISGFCVAGGL
ELALMCDLRVMEDTAVLGFFNRRLGVPLSDGGTVRLAAAVGYSNALEIIA
TGRRIYSGEARRIGLVNRVVATGTALGQAVNLAFSIAKFPMASLMHDRNA
VLENANAYNKPGFHVASYNEIMNVTSDMITDMQEGVKRFKNSEIKGPKTD
SWSIKEKTIPDWEKAEIEIEKQKQKT*
BS19571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5611-PC | 326 | CG5611-PC | 1..326 | 1..326 | 1651 | 100 | Plus |
| CG5611-PA | 326 | CG5611-PA | 1..326 | 1..326 | 1651 | 100 | Plus |
| CG5844-PA | 378 | CG5844-PA | 34..330 | 28..325 | 832 | 54.3 | Plus |
| CG6543-PA | 295 | CG6543-PA | 18..234 | 17..236 | 252 | 31.5 | Plus |
| CG6543-PB | 295 | CG6543-PB | 18..234 | 17..236 | 252 | 31.5 | Plus |
