BS19573.complete Sequence
1358 bp assembled on 2011-01-27
GenBank Submission: KX805027
> BS19573.complete
GAAGTTATCAGTCGACATGACGCCCAATGTTAAGGACGATGGTGACTGGA
GAGTATCCGGAATATCCAGAAATTACCCGAGCTATCGCCAGCATCGACCG
ATTACCAGTGAAAGCTGGCTGGAGGGGAAAAATGTAGATGACGAGGCCGA
AGGTCTTTGGCGAATTAACGATACGCTCTACGACTTAAGCGACTTTGCCG
CTCGCCATCCGGGTGGTTCATCTTGGATTGAGTGCACCAGGGGAACGGAT
ATCACCGAGCCCTTCGAGTCACATCATATCGAGGAGCGAGCTCGAGGAAT
GCTAAGCAAATTCGAGGTGCGAAAGGCTGCAAGGCCAAGGAACTACAAGT
TCACTCTTGAAGAGAATGGTTTCTATATGACACTGAAGCGGAGAGTGCGT
GAAAAGCTGAGAAAGATCGATTACTCTCCCACTAAGAAAACCGAGTTTCT
CCATCTTGGCATCTTGGTGTCCGTCTTCCTCTTCAGTTGGGCAGGCACCG
TTCTGGACTCATTGATCTTCAAGGGTCTAGCTGGATTGGCACTTTGCTGG
GTGGCAACCTCAACCCACAATTATTTTCATCAACGGGACAGTTGGCGGAT
GTACACTTTCAATCTGACCATGATGAACTTCCGAAACTGGCGAATTTCTC
ACGCCCTATCACACCATGTTTATGCTAATTCTCTGCACGACCTGGAGATG
TCCATGTTTGAGCCGTTCCTATGCTGGATTCCGGATAGTCATTATGCCAG
TAAACCTCAACGATTGATCTCAGTGGTTATCAGCCCCGTGGTATATGTGG
TCTTGTTCCAAGGGCAGTTTCTCATACGCCTGGTCCTTTCCCTGACCAAA
AGAAACGTTCTGTGCTGGGATGATCTCATTGGCTTCAGTCTGCCCATTTT
TATATATTTATCCACTGGTGTTAGCCTGTTGAGTGCACTTTTAAGCTGGG
AAATAATTATATCGGTTGGGAGCTTTATCTTCGGACTTGTTGGTCTCACT
GCTGCCCACCATGATCCACGTATTCTACACGATGGAGATGCCCAGCGACA
GGACTTCGATTGGGGTCTTTACCAGGTGGACACGATTATAGATCGCGGAG
ACATCAAGTGGTCGGATCTTCTGGTGCTCACACACTTTGGTGAGCATGCT
TTGCATCACCTATTTCCCACACTGGATCATGGAGTGCTAAAGCATCTGTA
TCCTGAGTTAAGGAAAACCATGAAAGAGTTCGACGTGGAACTGCGGGAGA
TCAATCACTGGAGTCACATAAAGGGACAGAATCAGCAATTGCTAAGAACA
GAGAAGAATCCAATTCCGCCGGGTAGTAAAAAGTTGATGTAGAAGCTTTC
TAGACCAT
BS19573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17928-RB | 1326 | CG17928-PB | 1..1326 | 17..1342 | 6630 | 100 | Plus |
| CG17928-RA | 1326 | CG17928-PA | 1..1326 | 17..1342 | 6630 | 100 | Plus |
| Cyt-b5-r-RB | 1311 | CG13279-PB | 1036..1157 | 1061..1182 | 265 | 81.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17928-RB | 1595 | CG17928-RB | 149..1474 | 17..1342 | 6630 | 100 | Plus |
| CG17928-RA | 1651 | CG17928-RA | 205..1530 | 17..1342 | 6630 | 100 | Plus |
| Cyt-b5-r-RB | 1557 | CG13279-RB | 1125..1246 | 1061..1182 | 265 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16792809..16793323 | 828..1342 | 2575 | 100 | Plus |
| 2L | 23513712 | 2L | 16792368..16792752 | 444..828 | 1925 | 100 | Plus |
| 2L | 23513712 | 2L | 16791941..16792273 | 113..445 | 1665 | 100 | Plus |
| 2L | 23513712 | 2L | 16791772..16791869 | 17..114 | 490 | 100 | Plus |
| 2L | 23513712 | 2L | 16789085..16789206 | 1182..1061 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:18 has no hits.
BS19573.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:04:53 Download gff for
BS19573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17928-RA | 720..2045 | 17..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:50 Download gff for
BS19573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17928-RA | 205..1530 | 17..1342 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:13 Download gff for
BS19573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17928-RA | 205..1530 | 17..1342 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:13 Download gff for
BS19573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16791772..16791869 | 17..114 | 100 | -> | Plus |
| 2L | 16791943..16792273 | 115..445 | 100 | -> | Plus |
| 2L | 16792370..16792752 | 446..828 | 100 | -> | Plus |
| 2L | 16792810..16793323 | 829..1342 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:50 Download gff for
BS19573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16791772..16791869 | 17..114 | 100 | -> | Plus |
| arm_2L | 16791943..16792273 | 115..445 | 100 | -> | Plus |
| arm_2L | 16792370..16792752 | 446..828 | 100 | -> | Plus |
| arm_2L | 16792810..16793323 | 829..1342 | 100 | | Plus |
BS19573.pep Sequence
Translation from 16 to 1341
> BS19573.pep
MTPNVKDDGDWRVSGISRNYPSYRQHRPITSESWLEGKNVDDEAEGLWRI
NDTLYDLSDFAARHPGGSSWIECTRGTDITEPFESHHIEERARGMLSKFE
VRKAARPRNYKFTLEENGFYMTLKRRVREKLRKIDYSPTKKTEFLHLGIL
VSVFLFSWAGTVLDSLIFKGLAGLALCWVATSTHNYFHQRDSWRMYTFNL
TMMNFRNWRISHALSHHVYANSLHDLEMSMFEPFLCWIPDSHYASKPQRL
ISVVISPVVYVVLFQGQFLIRLVLSLTKRNVLCWDDLIGFSLPIFIYLST
GVSLLSALLSWEIIISVGSFIFGLVGLTAAHHDPRILHDGDAQRQDFDWG
LYQVDTIIDRGDIKWSDLLVLTHFGEHALHHLFPTLDHGVLKHLYPELRK
TMKEFDVELREINHWSHIKGQNQQLLRTEKNPIPPGSKKLM*
BS19573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17928-PB | 441 | CG17928-PB | 1..441 | 1..441 | 2371 | 100 | Plus |
| CG17928-PA | 441 | CG17928-PA | 1..441 | 1..441 | 2371 | 100 | Plus |
| Cyt-b5-r-PB | 436 | CG13279-PB | 5..436 | 10..439 | 1303 | 55.6 | Plus |
| Cyt-b5-r-PA | 436 | CG13279-PA | 5..436 | 10..439 | 1303 | 55.6 | Plus |
