BS19574.complete Sequence
1679 bp assembled on 2011-02-17
GenBank Submission: KX806261
> BS19574.complete
GAAGTTATCAGTCGACATGTACCTACTACCTGGTAGTCTACTCCTGCTGA
TCTTTAGCTTTAGCCCGAGGTTAAGTTGCCTGCAGTTGAGCAAGTGCAAT
AATACTGAGGTGACCTTAATACGGAAGACGGAGCTCTTGACGTCACTCAC
ATTGAGCAACTGCACGCTGCCGCATGTGGAAAATGGATTTTTCGTACGGT
TTGATCATCTGCTTCATTTAGAACTGCAGCACAGTGGACTGAGTGATTTA
GATGATTTTTCACTGAATGGCTTGACAAAGTTACAATACCTTTCCCTGTC
CCACAACAATCTGAGCAGTCTGAGATCCTGGTCCAGTGAGCCTTTGGGTG
CATTAACCAATTTGGATCTAAGCCACAATATGTTAAGCAAACTGAGTGTC
AAGAGCTTTGAGCAATATCCCCAGTTGCAACAGCTCGACTTGCGTTACAA
TCGGATTAGTCAAATAGAGAATGACTCCTTTGATGGATTATCTCATTTAA
AGCATCTTTATCTGAACGGAAACCAACTGGCGCACATAGATGGTAGTTTC
TTTCGGGGTCTTCATCGGCTATCCAGTTTATCACTGCAGCACAATCGCAT
TGAGTTCATAGAAATGGATTCGTTTGAGAGTAATACCCATCTTCGAAGTC
TACGGCTGGACCAAAATCTCCTGAGCAGTCTTCAGTTTCTCAGTCAACGA
GGTTTGGCTCGACTGGTTCACTTGAATCTATCGAGTAATCTGCTACAAAA
ATTGGAGCCATTTGTATTTTCCAAAAACTTTGAGCTGCAGGACCTAGACT
TGAGTTATAATAACATAACTAAGCTCAACAAGGAAGCATTATCGGGATTG
GATTCTTTGGAGCGCCTCAACATAAGTCATAACTATGTGGATAAAATATA
TGACGAAAGCCTGGACTCCCTAATCGCTCTTCTTCAACTAGATATTAGCT
TCAACCTTCTGACCACACTGCCAGATAATTTATTCCATTTCAACACTCAA
TTGGAAGAGATTATCCTTGCTAATAACAAAATAGAAGAGATATCCTCTCA
GATGATGTTCAATCAAAATCATTTAAGATACATTAAATTGTCGGGAAATG
CAATCAGTGATGCCGCTTTCCTCGACAGGCTTTCTCCATCGGTGAATCGT
TTTACTCTCTACGTGGATCTCAGTTCGAATCGCCTCAAATCGTTGAACCT
CAGCAGTCTTCTTCATTTTCGCTATATAAACTTGGCGGATAATAACTGGA
GCTGCAATTGGTTGGTGGCTAACTTGGTGCAAAAATTACCAAACTCTGTT
AACTTCGCTCGTCCCTGGACTGTAATCAATAATTTGAGTGAAAATACCAC
AAATGTAGAGGGAATAGACTGCATTGAAGGGGGCACTAATCGTTCCATAA
TATTGCTGGATGTAAGTGGCGTGCCACAACCAAAATCAGACAATTGCGAT
TGTGTTGTTGCCTATGATGAGACAAATCCTTCACCTCCACCGCTCACCTG
GCCGAAGATACCAACAGATCGCTTTGATTCACGATCGGTGATCATTTGGA
TGCTGGTGGCCATTGCGATAGCTTTTTCAGGACTTCGTTGGTTGCGACGG
TTCGTGGATCGCAATGAGAAACGTAAACTGGGCCAAAAGATGCTGCATAA
TGTGGTTTGTTAAAAGCTTTCTAGACCAT
BS19574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18095-RC | 1647 | CG18095-PC | 1..1647 | 17..1663 | 8235 | 100 | Plus |
| CG18095-RA | 1647 | CG18095-PA | 1..1647 | 17..1663 | 8235 | 100 | Plus |
| CG18095-RB | 1695 | CG18095-PB | 1..1638 | 17..1654 | 8190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18095-RC | 1677 | CG18095-RC | 6..1652 | 17..1663 | 8235 | 100 | Plus |
| CG18095-RA | 2036 | CG18095-RA | 6..1652 | 17..1663 | 8235 | 100 | Plus |
| CG18095-RB | 1838 | CG18095-RB | 6..1643 | 17..1654 | 8190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14030689..14031534 | 862..17 | 4230 | 100 | Minus |
| 2L | 23513712 | 2L | 14029909..14030506 | 1458..861 | 2990 | 100 | Minus |
| 2L | 23513712 | 2L | 14029646..14029852 | 1663..1457 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:04:15 has no hits.
BS19574.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:14 Download gff for
BS19574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18095-RA | 6..1650 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:45 Download gff for
BS19574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18095-RA | 6..1650 | 17..1661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:24 Download gff for
BS19574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18095-RA | 6..1650 | 17..1661 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:24 Download gff for
BS19574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14029648..14029852 | 1457..1661 | 100 | <- | Minus |
| 2L | 14029911..14030504 | 863..1456 | 100 | <- | Minus |
| 2L | 14030689..14031534 | 17..862 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:45 Download gff for
BS19574.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14030689..14031534 | 17..862 | 100 | | Minus |
| arm_2L | 14029648..14029852 | 1457..1661 | 100 | <- | Minus |
| arm_2L | 14029911..14030504 | 863..1456 | 100 | <- | Minus |
BS19574.pep Sequence
Translation from 16 to 1662
> BS19574.pep
MYLLPGSLLLLIFSFSPRLSCLQLSKCNNTEVTLIRKTELLTSLTLSNCT
LPHVENGFFVRFDHLLHLELQHSGLSDLDDFSLNGLTKLQYLSLSHNNLS
SLRSWSSEPLGALTNLDLSHNMLSKLSVKSFEQYPQLQQLDLRYNRISQI
ENDSFDGLSHLKHLYLNGNQLAHIDGSFFRGLHRLSSLSLQHNRIEFIEM
DSFESNTHLRSLRLDQNLLSSLQFLSQRGLARLVHLNLSSNLLQKLEPFV
FSKNFELQDLDLSYNNITKLNKEALSGLDSLERLNISHNYVDKIYDESLD
SLIALLQLDISFNLLTTLPDNLFHFNTQLEEIILANNKIEEISSQMMFNQ
NHLRYIKLSGNAISDAAFLDRLSPSVNRFTLYVDLSSNRLKSLNLSSLLH
FRYINLADNNWSCNWLVANLVQKLPNSVNFARPWTVINNLSENTTNVEGI
DCIEGGTNRSIILLDVSGVPQPKSDNCDCVVAYDETNPSPPPLTWPKIPT
DRFDSRSVIIWMLVAIAIAFSGLRWLRRFVDRNEKRKLGQKMLHNVVC*
BS19574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18095-PC | 548 | CG18095-PC | 1..548 | 1..548 | 2819 | 100 | Plus |
| CG18095-PA | 548 | CG18095-PA | 1..548 | 1..548 | 2819 | 100 | Plus |
| CG18095-PB | 564 | CG18095-PB | 1..546 | 1..546 | 2806 | 100 | Plus |
| lbk-PB | 1252 | CG8434-PB | 301..690 | 25..428 | 358 | 29.3 | Plus |
| conv-PA | 1092 | CG8561-PA | 253..615 | 46..412 | 333 | 28.3 | Plus |
| lbk-PB | 1252 | CG8434-PB | 361..658 | 17..308 | 243 | 26.8 | Plus |
