BS19578.complete Sequence
3668 bp assembled on 2011-02-17
GenBank Submission: KX805717
> BS19578.complete
GAAGTTATCAGTCGACATGGAAGATAGAAACGAAGAAATTGAACCGTGCA
GGAGTATTGGACCACATGAGTTGGACGTCGTAAAAAGCCAGGCGGTGATT
AAGTTGTCTCCCGTTCCAGTGCCAGCCCACTTCAAGCGGCTGGAGTGCAA
CACCAACTTGAATCTTCCGCCTCTCAACTGGCTGACAACGTCGCACAGCA
GTCATGGATTACACCAGGCCCTCTACCAAAGTGCTGGCTTTGCCAGTTTT
CGATTGGGCCAGATGTTTCCGGACTGCGTGGGAGAGGTGGATGTGGTCAG
CGACGCGGAGAATATCAAGCAGCTACTCAAGTTGCCTTACAGCGCGAAGA
GCGCCATCAGCATGGTTGTGCACAAGGTGGGCAACACGTTGCTCCTGGAT
GAGTTCGACATCCAGAAGTATCTGCTGCGAAAGGCGGATGACGACTGGAA
GTGGCTAAGATCCTTTATTCTGGAGCACGTCCTGACCTATGGAGATACAC
AGCACAACTACTGCCTAAAGGAGCGGTCCCGGGAGGCGCTGCAAACAAAG
AATTTGCTGTCCAAGTTCCTGTATCACAGCCTTAAGCAAACTGGTGATGA
GCTGGACTACGATGTGGCCAATACACCCACTCAGTTAACCAGCCGCAAAC
AGGGATTGCCCATCACGGGACCAGTTCTCCCAGAACCGAAAATAGAGGAG
AACGTGCCAGACCCAAAGTCGAGCCATGCCTTCAATAGAAACGTGGTCTG
GACATTTGAGGATATACGCATGCTTATCGGCACAGATATGCCCATATTTG
GAGGACCCAACAGGCCGTGCATCAGCTTGCGTTTAAGGGATGCGGCTCAG
CCTATAAATGTGTTAACCGGAATCGATTACTGGCTGGACAATCTTATGTG
TAATGTGCCCGAGGTGGTGATGTGCTATCATCTGGATGGCATTGTCCAAA
AGTACGAGATCATCAAGACCGAGGACCTGCCGTACCTGGAGAACTCGCAG
TTTTCGCCCCAAGTGGTTCGCAACGTCGCACAAAACATTCTGGCCTTTCT
TAAGGCCAATGCCACCAAGGCGGGTCACACCTATTGGCTCTTTAAGGGGC
GCAACGATGACGTTGTCAAGTTGTACGATCTAACTACATTATGCCAAAGT
CAGGCATCTGAGAAGTCGGATGAAGATCCACCCGAGCAACAGGTTAATCC
CTTCACCGTTCCGGTGGGAATGCTGCTTTATTCAGTGGCTCGAAACATGA
AGAACACACTGCCTCACATAAGTCCTAAGGCAGCGGGCAATATACGTGCA
CTACTGGATAACTGCATCAAGCTACTGCCCAAGGAGCAGTACCCACAAAT
CGTGAGCTCCTCCCACTACATACTCTCGGATCTACATGTGCCGGCGGGCA
TCGATCCAAAGGCGCCGAAGTTTGAGGAAGTGGACTCAGATGATCAATCG
TTGTATGATGACGATGAAGAGGAGGACGAGGAGGACTATGAAGATGATGT
TCTAGACTACTCAAGTGAGAAGAGCTACCAAAGTAGCGAGCAGAGCGGTG
GCAAAGCTAACGTGGCTGTGCGTCATATATGCGATGCCCTGAGAGACTTT
AAATCTCATGCCAAGAAGTCCAAGCCGGCTCCTCTAATAGCTACAACTGC
TGAGCGGTGTAGCTTTTCTTTGGAGCACATTAGTGCTGGACTATCATGCC
TGCAGTATTTCAATGGAAGTCAAGAGGAGAAACTGAAGGAATCGGAGACA
AATGCCAAACAAGAGGAGAAGCGCCGAATTCTGCACGAGGAGCAAAATCC
GAACATGGCGAAGCCTTGCAGCGCAATTCCATTACCATACGAGCAGCTTA
AAGTGAGCCAGCAGCCAACACAAGTTGTGAAGAAACCAAACTCCAAAACG
CAGGCCAAACGCAGCAAATCTAAGGAACTCACCACTACCACCAAGTCCAA
ATCCGCCAATGCCAGCAATCAGCAGATGAGTGCCAAGTTTAACACACAGC
ACTTTGGCTCCTGGAACGTCCACTTAAAACTTCTGCTGTTAGAAAAGGCC
TGCCTGACATTTGCCACCCTGGCAGAGCACTATTATGAATCCCGCCGGTA
CGGATCTACCTTGCGATCCATTGAGCTGGCCTGTCGTTGCCAACAAGTGC
TCAATAAGTATATGGCCAATGTGGTTTCACAGTACAGTTGCTTGCTCGGC
CGGGCAGGTGACTGTTTTTTCCAGATTTCGAAAAACTGGGAATCCATTGA
GGAGTACATCCAGCAGTTTGGGGAGTTGGATCCCTCGATGGATTTCATCG
GCGACGAGTTGGCTCAGGAGCTGGAAGGCGAAGAAGAGGAACTGCCCTCC
TTGGCGCCTTCCAACAATGTGGAGCAAGTGATGCTGCACAGCTGCAAGTG
CTACGAACAAGCATTGGAGCATGCCCAGAAAGCGGAAAGCAATGAACTGC
TTCGGCGACTAGGAAACGTGCGGAACGAGCTTGGTCTTAAGTACATGTAC
TGGGCTCAAGAGGAATACAGTGAGTTAATGAAGAAGAAGGAGTCCACAAA
AGACGCTGGAAATGACCAAACGGAGGATAGCCCAACGGCAGATCCTTCCG
AGCCGTTGTATGTGAAACTGACAGTTAATTCTTATGATTGCCTACGTCGA
GGAATAGAAGCCTTCACTGCCGTGAAAGATAATGTCAATTTGGCGTTTCT
ATATTGCAATATTGGTAGATTTATGCGCCTGCGCGCCCATCTTATCATGC
CCAATGAGAGTGCCATAACCTTAGAAAGCCAAAAAGCCTTCTACAACGAG
GCATTCAGCTATTACGTGAAGGCCAAAGATTGTCTGGATACTCGTAAAGC
AAACCCCGAACTATGGGACCTCGTCCATTGGGAATTATCCACTGCCACTT
TTACGTTAGCTAAACAACTTCAGGACCACAGCGCAGCAGACAAATCCAGC
CTAGTTGACGCCTCCAAAGAAGTGCTGGAATTGCTTCAGAAATCGTTGCG
ACTTTGTGATGTCGAACACCCTGGTGCACGACAAGTGCTATACAGTTTTC
GATCGGGCTTAATACACAAAAGGATTGCTTCCTTCCACTACTCGCAGCTG
CGTTCTCATGGCTGTTGTGATTTCTCTCAGCTGCCCAAATCTACTCTACA
GCTCTGTAAATACCACTACGAGAAGGCCACTCAAATTCTAGAGAGCCTTA
AGGAGGTGGGAGACCTGTTGGTGGTGCAGCTAGAGCGGATTTCCCTTCAT
GAATTTCTGGCCGAACTTTCCACTCACACCGCACAGAAGATCAAGCAAAT
GCAAGCGGCTTTGGAAATTTGTTTACAGTGTCACCTCATATTTGCCCACG
TCATCGATACTAACAGTGGCCAAGTGGCCGATGACGAGTTCGCCGGCCAT
TTGACGCTCTTTGAAAGCCGCCTGCAGAATGCGCTGAAGACGCTTACGAA
GCTCACGCTGGCCGGCAAGGATCCCAAGCAGTTGTCAAAGCTGTACAAGC
GCATGTATATGGAAACCTTGACTGGGAAACATGGCCTAGGGGCCCAGCAA
TCGTCGACAGCTTGCTTAAAGCATTTGCACATGCTGCTCGCCCGGCTACG
GGCCATGTGCGAAACACAGCTGGCCCCGCGACCAGCCGTACGTGTCTTCT
GAAAGCTTTCTAGACCAT
BS19578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6511-RB | 3636 | CG6511-PB | 1..3636 | 17..3652 | 18180 | 100 | Plus |
| CG6511-RA | 3636 | CG6511-PA | 1..3636 | 17..3652 | 18180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6511-RB | 4498 | CG6511-RB | 266..3908 | 17..3659 | 18185 | 99.9 | Plus |
| CG6511-RA | 4320 | CG6511-RA | 88..3730 | 17..3659 | 18185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8721661..8724133 | 38..2510 | 12365 | 100 | Plus |
| 3L | 28110227 | 3L | 8725126..8725518 | 3267..3659 | 1935 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8724490..8724804 | 2759..3073 | 1575 | 100 | Plus |
| 3L | 28110227 | 3L | 8724190..8724441 | 2509..2760 | 1260 | 100 | Plus |
| 3L | 28110227 | 3L | 8724865..8725060 | 3071..3266 | 980 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:20:46 has no hits.
BS19578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:37:50 Download gff for
BS19578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6511-RA | 88..3722 | 17..3651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:47 Download gff for
BS19578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6511-RA | 88..3722 | 17..3651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:39:17 Download gff for
BS19578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6511-RA | 88..3722 | 17..3651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:39:17 Download gff for
BS19578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8721589..8721609 | 17..37 | 100 | -> | Plus |
| 3L | 8721661..8724133 | 38..2510 | 100 | -> | Plus |
| 3L | 8724192..8724441 | 2511..2760 | 100 | -> | Plus |
| 3L | 8724492..8724803 | 2761..3072 | 100 | -> | Plus |
| 3L | 8724867..8725060 | 3073..3266 | 100 | -> | Plus |
| 3L | 8725126..8725510 | 3267..3651 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:47 Download gff for
BS19578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8717967..8718160 | 3073..3266 | 100 | -> | Plus |
| arm_3L | 8714761..8717233 | 38..2510 | 100 | -> | Plus |
| arm_3L | 8717292..8717541 | 2511..2760 | 100 | -> | Plus |
| arm_3L | 8717592..8717903 | 2761..3072 | 100 | -> | Plus |
| arm_3L | 8714689..8714709 | 17..37 | 100 | -> | Plus |
| arm_3L | 8718226..8718610 | 3267..3651 | 100 | | Plus |
BS19578.pep Sequence
Translation from 16 to 3651
> BS19578.pep
MEDRNEEIEPCRSIGPHELDVVKSQAVIKLSPVPVPAHFKRLECNTNLNL
PPLNWLTTSHSSHGLHQALYQSAGFASFRLGQMFPDCVGEVDVVSDAENI
KQLLKLPYSAKSAISMVVHKVGNTLLLDEFDIQKYLLRKADDDWKWLRSF
ILEHVLTYGDTQHNYCLKERSREALQTKNLLSKFLYHSLKQTGDELDYDV
ANTPTQLTSRKQGLPITGPVLPEPKIEENVPDPKSSHAFNRNVVWTFEDI
RMLIGTDMPIFGGPNRPCISLRLRDAAQPINVLTGIDYWLDNLMCNVPEV
VMCYHLDGIVQKYEIIKTEDLPYLENSQFSPQVVRNVAQNILAFLKANAT
KAGHTYWLFKGRNDDVVKLYDLTTLCQSQASEKSDEDPPEQQVNPFTVPV
GMLLYSVARNMKNTLPHISPKAAGNIRALLDNCIKLLPKEQYPQIVSSSH
YILSDLHVPAGIDPKAPKFEEVDSDDQSLYDDDEEEDEEDYEDDVLDYSS
EKSYQSSEQSGGKANVAVRHICDALRDFKSHAKKSKPAPLIATTAERCSF
SLEHISAGLSCLQYFNGSQEEKLKESETNAKQEEKRRILHEEQNPNMAKP
CSAIPLPYEQLKVSQQPTQVVKKPNSKTQAKRSKSKELTTTTKSKSANAS
NQQMSAKFNTQHFGSWNVHLKLLLLEKACLTFATLAEHYYESRRYGSTLR
SIELACRCQQVLNKYMANVVSQYSCLLGRAGDCFFQISKNWESIEEYIQQ
FGELDPSMDFIGDELAQELEGEEEELPSLAPSNNVEQVMLHSCKCYEQAL
EHAQKAESNELLRRLGNVRNELGLKYMYWAQEEYSELMKKKESTKDAGND
QTEDSPTADPSEPLYVKLTVNSYDCLRRGIEAFTAVKDNVNLAFLYCNIG
RFMRLRAHLIMPNESAITLESQKAFYNEAFSYYVKAKDCLDTRKANPELW
DLVHWELSTATFTLAKQLQDHSAADKSSLVDASKEVLELLQKSLRLCDVE
HPGARQVLYSFRSGLIHKRIASFHYSQLRSHGCCDFSQLPKSTLQLCKYH
YEKATQILESLKEVGDLLVVQLERISLHEFLAELSTHTAQKIKQMQAALE
ICLQCHLIFAHVIDTNSGQVADDEFAGHLTLFESRLQNALKTLTKLTLAG
KDPKQLSKLYKRMYMETLTGKHGLGAQQSSTACLKHLHMLLARLRAMCET
QLAPRPAVRVF*
BS19578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6511-PB | 1211 | CG6511-PB | 1..1211 | 1..1211 | 6326 | 100 | Plus |
| CG6511-PA | 1211 | CG6511-PA | 1..1211 | 1..1211 | 6326 | 100 | Plus |
