BS19579.complete Sequence
3428 bp assembled on 2011-02-17
GenBank Submission: KX800869
> BS19579.complete
GAAGTTATCAGTCGACATGGCCACCACCAGTACGTCAAACATGTCCCGCA
ACGGTGGCTTCTGTGGTGCATTGCAGCGGGCACCGCCGCCGATGCCGCCG
ACCCTCATCCGACGCCTGAGTAGCCGGGAGTGCTACGGAGTGGGCAAGGT
GAAGGTCATGCTGCGGGTGGCGGACCGGGACAGGAACTCCGGCGGAACCG
AGCCGGACTTTATGGCCCTGGACAAGAAGAAGCGACAGGTCACGCTCACC
GATCCGAGAACCGCGTGTCCGCCGCCCCAGGCTGCCCAGGAACGGGCGCC
CATGGTGGCCGCTCCCAAAATGTTTGCATTCGATAACCTCTTCACTGGCG
AGGATAAGCAGTCGGATGTGTGTGCATCGGCGCTGAGCGAAGTGATACCC
GCCGTGCTCGAAGGTTCCGATGGCTGCCTGCTGGCCATGGGATATCCCGC
CACCGGCCAGGCCCAAACGGTGTTGGGAGAACTGGGCGGTGGTAGTGGGA
GTGGCAGTGCCAGTGGCAGCGGTGTGGCGTGTTCCCTGGGAGCAGCACCC
TGCGCCATCGCCTGGCTGTACAAGGGCATCCAGGAGAGGCGGCAGAAGAG
CGGAGCACGCTTCTCGGTGCGGGTCAGTGCCGTGGGCGTCAGTGCCACCA
AGCCGGATGCCCTATCGCAGGATTTGCTCATCTCGCATGCAGCCGAATCT
GACGACTCCCCGGGGATTTATTTGCGTGACGACTTCCTTGGCGGTCCAAC
GGAACTACGTGCACCCACCGCCGAGCGTGCGGCCCTTTTCCTCGACTCAG
CGCTCGCCGGACGCTTAAAAAGTTCCGGTTCCACGGCATCTGGGAGTTCT
GGATGTGCCGCCCCCTTGGAGTCCGCCCTCATCTTCACGCTGCACGTCTA
CCAGTACAGCCTGTCCCGCAAGGGAGGTGTTGCTGGCGGTCGGAGCCGTT
TACATATCATCGACCTGGGCGGGTGTGCGAATCGCAACGGGGGACTGCCG
CTGTCGGGGATCGGTAACATACTGCTCGCGATACTATCCGGCCAGAGGCA
TCCCCCACACAAGGACCACCCGCTGACGCCGCTGCTCAAGGACTGCCTGG
CCCCCATTACCTGCCATGTGGCCATCGTGGCCCATGTGCGACCAGAGCAG
AGCTATCAGGACGCACTCTCCACCATTCAAATCGCATCCAGAATTCATCG
GCTGCGTCGCAGGAAACATCGTGTTCCCATGCCCTTGGCTGTGGGCTTGG
CCCAAGGACTCGGCGGCAACGGCTCCTCGGCGGGATCGGGTGCGGATCCG
TCGAGCTCGGAAATCTCAGCCGACACTGTCATCTATATGGGGCCCAATGA
CGATGCCACGGATGGGGAACATCCGCCCGTATATCTGCCATCGCTGACTG
CGGGGGATAATCGCGGGGTGATGAGTAAAGCCCTCAAAGGGAGTGGGCTG
GAGAAGCCCCCCTCGAAGTCAGCTTCCAACAGTCCCATGATGATGAAAAA
AGCCATGGCAGCGGAAAAAGCTAAAAAGCTTCCGGGAAGCCACACGGGCA
GTCTGAAACGTCAGGCGGGAGCGGGAGCCTGCTCCTCGCCAATGATTCCA
CACGAGCAGCCACAGATACAGGCAATGGGTTCACCTATACCGATACCCCG
GCACATGGTGTCCAAAGGGTCGATGGTGCCCTCGCCGAAGGGATCGCCCA
TGCGAAGAGCTCATCCGGGAGCAGCTCTCGAACAGCTGGAAGCGGGAATG
AGGAAAATAACGGAAGAGCAGTGGATCGATGGACCACGAGTGTCCAGGGC
GAAGGTAGCGGAAGCTCGTCATCTAATGAGGGAGGTGAATCATGTGAAGC
AATGCGAAACATGGGTGGATGGTCCAAAGTCGCAATCGTGCAGATCCTTG
ACAGCCTGCAATCTTCCAGCAGCCGGCGGAAGTCAGACACAGGGCTATGG
TTTTATGGATGCCCACAAGAAGACCATGATTCGACAGTGGGTTGAGAATC
AGACAACGCAAGTCTTCCAAAGTACGGTGTCCGCCAGTAATTCCCCCACT
GCTTTGCACTGGAAACTCTCGCAGTTGAAGCAGAAATCACTGGATTTACC
AGACAGACCTGCATTCAATCCGGAACCCTCCTTGGATCTGAATCAGCCGT
GCTTCGAGAGTTTACCTCTTCTGGATCCAGCTCCTCCGGATGGCGACGAG
GACGAAGACAGCGGTCCGTCAGAGGTACCCCCTGCTCTACCATTACTGGA
TGATCCCCTCGGCTCCAGGGACATATCACAGGATAATCTACACAGGATGC
TCTCGCGGCATGTGTCCAGGGAACAGCTTCATGAGGCTGAACTGGTGGCC
AGTCGAGCGTCATCCTCGCATCATCCATCCCAACGGAGTATTGATTGTGG
CCTGCAAGTTACGGAGGAAGAGATCGCCAGGACCATGTCCAGAGATCGGG
ATCACGATCCCAGTGCACATCCTCTATCAGCTCTGAGTCACTGCGACAAC
ATATCCTTTGTGTCCAGCTTCAACATGGCCTGTGAATCTTTCAGCGAGTG
CGGCGAAAGAGCAAGACAACAATTTGATCAGCTGGCTCGCCTGCACGAGA
TCTTCACCTCCCAACTGGCCATGGCAGAGGTCACGCCCTCCGCCGCACTT
TTCCGGACGGATATTGGAAGTGTGTTTAGTGAGCCGGTTTATCACTTCAA
CGTGGGCCAGAGTAGCGTTTGCAGTGAACCAGCCTACAGATTGACACCCA
GTCCGCCAAAGCAACCGTCACACAGTCCAAGTCAAGGGTCACTCCCCAGT
TTGAATGGCATCATGGAGATAGCAGGAATGGATGATTATGCTCTACTCCG
CCAGCCAGACGGAGCATCCGATCCCAATCTGCAGAAAGGAGAGAAAAGAT
TCACGCCACAGCACGATGATATTTGCGAATTGGATGAGAAATCCATGGCG
GCGGCGGTGGGCAAGGGAAATTCTCTGGAGGATGCACAGCACAAGCTGAA
CGAGATCACGAACATCCTACCCCTGGCTGCTCAATCGCGACTTCCCCTGC
TGCCCCTGAATACCAGCTCCGAGGCCTATGATAGTGGTCATGACTCCAAC
TCCACTCCGAGGACTTCCAAACATTCGGGCATATCCCGTCGGGCGGAGAG
TGGTTATCACAGTGTGGCCACCGTTAGGGATTCGGATGAGAGTAGCTTCG
CGTCCGGCATGTCCAAGGGTCAACGGCATCGCATCACCGTTTCAGGAACA
GGAGCAGTCACATCGGCGGGCATTGGAAATTACCAGAGGCAGTGCCACAA
GAAGCGACATCGACAGGATCAGGCTGGCAACAACAAAGGCCTCTGCAACT
GGCTCTTGACACCATTTTCCTGCACTTATCCAGAGACTGAGGGTGAGATC
AGCGATTTTTAAAAGCTTTCTAGACCAT
BS19579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14535-RB | 3396 | CG14535-PB | 1..3396 | 17..3412 | 16980 | 100 | Plus |
| CG14535-RA | 3396 | CG14535-PA | 1..3396 | 17..3412 | 16980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14535-RB | 5826 | CG14535-RB | 517..3914 | 16..3413 | 16990 | 100 | Plus |
| CG14535-RA | 5606 | CG14535-RA | 297..3694 | 16..3413 | 16990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7847805..7848851 | 2565..1519 | 5235 | 100 | Minus |
| 2L | 23513712 | 2L | 7846817..7847666 | 3413..2564 | 4250 | 100 | Minus |
| 2L | 23513712 | 2L | 7848993..7849590 | 1526..929 | 2975 | 99.8 | Minus |
| 2L | 23513712 | 2L | 7852957..7853302 | 361..16 | 1730 | 100 | Minus |
| 2L | 23513712 | 2L | 7851407..7851743 | 695..359 | 1685 | 100 | Minus |
| 2L | 23513712 | 2L | 7850306..7850540 | 929..695 | 1175 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:57:50 has no hits.
BS19579.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:12 Download gff for
BS19579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14535-RA | 298..3691 | 17..3410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:56 Download gff for
BS19579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14535-RA | 298..3691 | 17..3410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:13 Download gff for
BS19579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14535-RA | 298..3691 | 17..3410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:13 Download gff for
BS19579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7846820..7847664 | 2566..3410 | 100 | <- | Minus |
| 2L | 7847805..7848849 | 1521..2565 | 100 | <- | Minus |
| 2L | 7848999..7849589 | 930..1520 | 100 | <- | Minus |
| 2L | 7850306..7850539 | 696..929 | 100 | <- | Minus |
| 2L | 7851407..7851740 | 362..695 | 100 | <- | Minus |
| 2L | 7852957..7853301 | 17..361 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:56 Download gff for
BS19579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7846820..7847664 | 2566..3410 | 100 | <- | Minus |
| arm_2L | 7847805..7848849 | 1521..2565 | 100 | <- | Minus |
| arm_2L | 7848999..7849589 | 930..1520 | 100 | <- | Minus |
| arm_2L | 7850306..7850539 | 696..929 | 100 | <- | Minus |
| arm_2L | 7851407..7851740 | 362..695 | 100 | <- | Minus |
| arm_2L | 7852957..7853301 | 17..361 | 100 | | Minus |
BS19579.pep Sequence
Translation from 16 to 3411
> BS19579.pep
MATTSTSNMSRNGGFCGALQRAPPPMPPTLIRRLSSRECYGVGKVKVMLR
VADRDRNSGGTEPDFMALDKKKRQVTLTDPRTACPPPQAAQERAPMVAAP
KMFAFDNLFTGEDKQSDVCASALSEVIPAVLEGSDGCLLAMGYPATGQAQ
TVLGELGGGSGSGSASGSGVACSLGAAPCAIAWLYKGIQERRQKSGARFS
VRVSAVGVSATKPDALSQDLLISHAAESDDSPGIYLRDDFLGGPTELRAP
TAERAALFLDSALAGRLKSSGSTASGSSGCAAPLESALIFTLHVYQYSLS
RKGGVAGGRSRLHIIDLGGCANRNGGLPLSGIGNILLAILSGQRHPPHKD
HPLTPLLKDCLAPITCHVAIVAHVRPEQSYQDALSTIQIASRIHRLRRRK
HRVPMPLAVGLAQGLGGNGSSAGSGADPSSSEISADTVIYMGPNDDATDG
EHPPVYLPSLTAGDNRGVMSKALKGSGLEKPPSKSASNSPMMMKKAMAAE
KAKKLPGSHTGSLKRQAGAGACSSPMIPHEQPQIQAMGSPIPIPRHMVSK
GSMVPSPKGSPMRRAHPGAALEQLEAGMRKITEEQWIDGPRVSRAKVAEA
RHLMREVNHVKQCETWVDGPKSQSCRSLTACNLPAAGGSQTQGYGFMDAH
KKTMIRQWVENQTTQVFQSTVSASNSPTALHWKLSQLKQKSLDLPDRPAF
NPEPSLDLNQPCFESLPLLDPAPPDGDEDEDSGPSEVPPALPLLDDPLGS
RDISQDNLHRMLSRHVSREQLHEAELVASRASSSHHPSQRSIDCGLQVTE
EEIARTMSRDRDHDPSAHPLSALSHCDNISFVSSFNMACESFSECGERAR
QQFDQLARLHEIFTSQLAMAEVTPSAALFRTDIGSVFSEPVYHFNVGQSS
VCSEPAYRLTPSPPKQPSHSPSQGSLPSLNGIMEIAGMDDYALLRQPDGA
SDPNLQKGEKRFTPQHDDICELDEKSMAAAVGKGNSLEDAQHKLNEITNI
LPLAAQSRLPLLPLNTSSEAYDSGHDSNSTPRTSKHSGISRRAESGYHSV
ATVRDSDESSFASGMSKGQRHRITVSGTGAVTSAGIGNYQRQCHKKRHRQ
DQAGNNKGLCNWLLTPFSCTYPETEGEISDF*
BS19579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14535-PB | 1131 | CG14535-PB | 1..1131 | 1..1131 | 5894 | 100 | Plus |
| CG14535-PA | 1131 | CG14535-PA | 1..1131 | 1..1131 | 5894 | 100 | Plus |
| Klp64D-PA | 677 | CG10642-PA | 18..357 | 42..401 | 216 | 24.3 | Plus |
