BS19589.complete Sequence
1862 bp assembled on 2011-02-17
GenBank Submission: KX803738
> BS19589.complete
GAAGTTATCAGTCGACATGATGATGAACGCCTTCATTGAGCCGGCTCAGC
ACCACCTGGCCAGCTACGGGCTGCGAATGTCGCCCAACACCACCGCCAGT
AACAGCAACGCGCAGCAGCAACAGCAGCAGCAACTGGAGATGACCCAACA
GCAGCAGCAACAACAGCAACAACAGCAGCAGCAACAGCAACAGGATCAGG
AATCCGCGGCGGCCACTGCTGCAGCCTATCAGAACTCCGGATATGGGCAC
TTTAACAGCTATGCCTCCCGGGACTTTTTGCTGGGCAGGAGGGAGGCCGA
GTACGGTGTGGCAGGATCCGCCGGACAGGCCTCCGCCGCAGCGGATTCCA
TGCTCTTCTCCGGCTTTCCCGCTCAGGCCGCGGAGCTGGGCTCCGGGTTC
GGACAACACCCCTTCCACAGCCACCATCACCACCATCAGATGCGAATGGG
CATGGCGGATGCCTACGCCGCCGGCCACCCGTACAACCACCACGGCAACT
TCCCGACGGCGGCAGTGCACCACCCGGTCGTGCACCACCCGTCCCACCAC
GCCATGTCCGCGATGCACCCGGCCGGAGCAGGGGCCTTCCTGCGCTACAT
GCGCCATCAGCCGGCCTCGTCCGCCTCCAGCGTTAAGCAGGAGATGCAGT
GCCTCTGGATAGACCCCGACCAGCCGGGCCTGGTGCCCCCGGGCGGCAGG
AAGACCTGCAACAAGGTATTCCACTCGATGCACGAGATCGTCACCCACCT
GACCGTGGAGCACGTGGGCGGACCCGAGTGCACCACCCACGCCTGCTTCT
GGGTGGGCTGCTCTCGCAACGGACGCCCTTTCAAGGCCAAGTACAAGCTG
GTCAACCACATCCGCGTCCACACCGGCGAGAAACCTTTCGCCTGCCCGCA
CCCGGGTTGCGGCAAGGTCTTCGCCCGGAGCGAGAACCTCAAGATCCACA
AGCGGACGCATACAGGCGAGAAGCCCTTCAAGTGCGAGCACGAGGGCTGT
GATCGCCGGTTCGCCAACTCCTCGGATCGGAAGAAGCACTCCCACGTCCA
CACGTCGGACAAGCCCTACAATTGCCGGATTAATGGCTGTGATAAGTCCT
ACACGCATCCCTCTTCGCTGCGGAAGCACATGAAGGTGCATGGCAATGTG
GACGAGAAGAGCCCATCCCACGGCTACGACAGCGAGGGCGAGGAGAGCTC
CAGCTCGAGCATCATCACCGGCGGAGCCCAGACGCCGCCTTCGACCCGAC
TGGATGGAAGTGCAGGCAGCAGCAGCGGGGTGAGCAGCCTGAGCGGCGGA
AGCGGCATCAAGTCCTCCCCGCACTCGATCAAGTCGGAGCCCAATCCGAT
GCACAGTGTCCACCTGGGAGCCTCGAGCAGCGGCAGCAGCAGCACGGCCA
GCAGCAGTGCTTCCCACTTGCTGCAGCACCAGCAGCACCAGCACCAGCAG
CAGCAACAACAGCAGCAGCACCAGCAGCAGGCACAGCAGCAGCAACAGCT
GACCGCCCATCCCAGCGACCCGAAGTCCTCGCCTGCCCTCCAACTGATGG
CCGCTTCTGCCTCCGCCTACCTGCCACCGCCGCTGGGACCGCCGCCGTCG
CACCACCACCACCCCCATCACCACCAGGCGGCGCCCTCTCCGGGGGCAGC
TGCTGCCTCCGCCTCCATGCTGCACCACAACCACCACCTACTGTACCACC
CGGCGGCCCAGCACCACCCACCCAGCGACTGGTACCACACGACGGCGCCG
AGCGGCAGTGCGGAGGCCATGAACCCGCTGAACCATTTCGGACACCATCA
CCACCACCACCACCTGATGCATCCCGGCGCAGCGACGGCGTATTGAAAGC
TTTCTAGACCAT
BS19589.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opa-RA | 1830 | CG1133-PA | 1..1830 | 17..1846 | 9150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opa-RA | 2939 | CG1133-RA | 293..2123 | 16..1846 | 9155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4853105..4854055 | 16..966 | 4755 | 100 | Plus |
| 3R | 32079331 | 3R | 4868451..4869163 | 1134..1846 | 3565 | 100 | Plus |
| 3R | 32079331 | 3R | 4868140..4868314 | 963..1137 | 875 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2344..2549 | 1258..1464 | 175 | 57.6 | Plus |
BS19589.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:15 Download gff for
BS19589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| opa-RA | 294..2122 | 17..1845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:52 Download gff for
BS19589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| opa-RA | 294..2122 | 17..1845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:37 Download gff for
BS19589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| opa-RA | 294..2122 | 17..1845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:37 Download gff for
BS19589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4853106..4854054 | 17..965 | 100 | -> | Plus |
| 3R | 4868143..4868312 | 966..1135 | 100 | -> | Plus |
| 3R | 4868453..4869162 | 1136..1845 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:52 Download gff for
BS19589.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 678828..679776 | 17..965 | 100 | -> | Plus |
| arm_3R | 693865..694034 | 966..1135 | 100 | -> | Plus |
| arm_3R | 694175..694884 | 1136..1845 | 100 | | Plus |
BS19589.pep Sequence
Translation from 16 to 1845
> BS19589.pep
MMMNAFIEPAQHHLASYGLRMSPNTTASNSNAQQQQQQQLEMTQQQQQQQ
QQQQQQQQQDQESAAATAAAYQNSGYGHFNSYASRDFLLGRREAEYGVAG
SAGQASAAADSMLFSGFPAQAAELGSGFGQHPFHSHHHHHQMRMGMADAY
AAGHPYNHHGNFPTAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMRHQPA
SSASSVKQEMQCLWIDPDQPGLVPPGGRKTCNKVFHSMHEIVTHLTVEHV
GGPECTTHACFWVGCSRNGRPFKAKYKLVNHIRVHTGEKPFACPHPGCGK
VFARSENLKIHKRTHTGEKPFKCEHEGCDRRFANSSDRKKHSHVHTSDKP
YNCRINGCDKSYTHPSSLRKHMKVHGNVDEKSPSHGYDSEGEESSSSSII
TGGAQTPPSTRLDGSAGSSSGVSSLSGGSGIKSSPHSIKSEPNPMHSVHL
GASSSGSSSTASSSASHLLQHQQHQHQQQQQQQQHQQQAQQQQQLTAHPS
DPKSSPALQLMAASASAYLPPPLGPPPSHHHHPHHHQAAPSPGAAAASAS
MLHHNHHLLYHPAAQHHPPSDWYHTTAPSGSAEAMNPLNHFGHHHHHHHL
MHPGAATAY*
BS19589.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opa-PA | 609 | CG1133-PA | 1..609 | 1..609 | 3347 | 100 | Plus |
| lmd-PB | 866 | CG4677-PB | 442..681 | 231..491 | 500 | 40.5 | Plus |
| ci-PB | 1279 | CG2125-PB | 338..556 | 229..438 | 405 | 40.5 | Plus |
| sug-PB | 322 | CG3850-PB | 56..299 | 200..476 | 401 | 33.8 | Plus |
| sug-PA | 384 | CG3850-PA | 118..361 | 200..476 | 401 | 33.8 | Plus |
