Clone BS19594 Report

Search the DGRC for BS19594

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:195
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptRpL36A-RA
Protein status:BS19594.pep: full length peptide match
Sequenced Size:347

Clone Sequence Records

BS19594.complete Sequence

347 bp assembled on 2011-01-27

GenBank Submission: KX805571

> BS19594.complete
GAAGTTATCAGTCGACATGGTGAACGTACCGAAACAACGCCGCACCTTCT
GCAAGAAGTGCAAGGTCCACAAGCTGCACAAGGTGACGCAGTACAAGAAG
TCCAAGGAGCGCAAGGGAGCTCAGGGCAGGCGTCGTTACGACAGGAAACA
GCAGGGTTTCGGAGGTCAGACCAAGCCCATCTTCAGGAAGAAGGCCAAGA
CCACCAAGAAGATTGTGCTGCGTATGGAGTGCACCGAGTGCAAATACCGC
AAGCAGACTCCCCTGAAGCGTTGCAAGCACTTCGAGCTGGGCGGTGACAA
GAAGCGCAAGGGACAGATGATCCAGTTCTAGAAGCTTTCTAGACCAT

BS19594.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36A-RB 315 CG7424-PB 1..315 17..331 1575 100 Plus
RpL36A-RA 315 CG7424-PA 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36A-RB 514 CG7424-RB 85..399 17..331 1575 100 Plus
RpL36A-RA 457 CG7424-RA 35..349 17..331 1575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8042439..8042614 194..19 880 100 Minus
2L 23513712 2L 8041988..8042127 331..192 700 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:46:34 has no hits.

BS19594.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:00 Download gff for BS19594.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 32..346 17..331 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:44:13 Download gff for BS19594.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 35..349 17..331 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:25 Download gff for BS19594.complete
Subject Subject Range Query Range Percent Splice Strand
RpL36A-RA 35..349 17..331 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:25 Download gff for BS19594.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8041988..8042125 194..331 100 <- Minus
2L 8042440..8042615 17..193 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:44:13 Download gff for BS19594.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8041988..8042125 194..331 100 <- Minus
arm_2L 8042440..8042615 17..193 99   Minus

BS19594.pep Sequence

Translation from 16 to 330

> BS19594.pep
MVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGG
QTKPIFRKKAKTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKGQ
MIQF*

BS19594.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
RpL36A-PB 104 CG7424-PB 1..104 1..104 562 100 Plus
RpL36A-PA 104 CG7424-PA 1..104 1..104 562 100 Plus