BS19595.complete Sequence
1751 bp assembled on 2011-02-17
GenBank Submission: KX804174
> BS19595.complete
GAAGTTATCAGTCGACATGGCCCAAAAGCAGGTGCTAGTCTTAAACCTAT
TTTGCCTGGGCTCACTATTTTTCAAAACAGTGCCAGCTTCCACGGAATAC
AACAAATACGTGGCGCAGATATTTCAAAAATACGGCAACGGCGGGACAAT
CAACTTTGAGGGTCTTGAGCATTTGATGTTCAGCCTGAACTTGGGTCAAA
TCCAATTCGATCCCTCGCACACGATCGATCAGCATCGACCTCAGGGATAC
TCGAACGAGATGCCGCATGCCACAAATGTAACGTATTACTTTGAGCCGAC
ACGAGTCAATGCCACCGATGAGGAAGCTTTGGAGCTGCAAATCTCTCCTC
GTGGCAATCACTCAAATTCACAGTCGGAGGCCGAGGTTCCGGAGTTCCTA
GAAATTCATGACCCCAAGCACCGACATCCGAGGGAGAGTTCTGAACCTGT
TGCCGCTTGCTTATCACCGAAGTCTTTACTTTCCCTCATCGTGAACCACA
ACGATCTCCACAAAAACATTGCCTACCGCAAGCTGCTCATTAAGAATGAC
GTTAGCTCAACTGATGGCGTCCACAATTCTGAAGAGGAATACAACGAATT
CATCAACTCGGTGCGGATCACTCCGCGAGCTTTTATGAAACTCTGTCCAG
CTCTATTAGCCCAGATCGATAATGGAGTTTGCAAGCAACCAGCTGTACGA
TCAGTAAACCTTAACGATAAGAACCAGAAGATATGGTACGCTTGGATCTA
TGCCAGCATCACTATGCTTATACTGTCCGCTTGCGGATTGCTGGGCATTC
TTCTGGTTCCTTTGATGAAGTCGGCTGCCTATCAGGAAATTCTCAAGTTC
CTAGTTTCCATCGCTGTGGGCACTTTAGCTGGCGATGCCCTGATGCACTT
GCTCCCCCATGCCCTTTTCAAGGAGGAAAAGCACGAGGAGGAAGTCACTG
GTATCAATCCCTTGGAATCTGATCACAAACATAGCAATGAGGCGGCTCTG
CTATGTGGTTGTACTTTCCTGGCTGCTCTATTCATGTATATGCTGGAGAA
CCTGATTCCGCTGCTAAAGGGCGGTAAGCCGGGTCATGGACATAGCCACG
GACATGGTCACAGCCACGGCCGCAGTCATGGACATATGGAGAAGCCAGCT
GCAAAGGATGCTATTGATCTGCCACCTCCTCGAGAGCTCAATGTGATGTT
GCAGGAGGCCAAGCTGGATGAGAAGACCCCCGATCGACCGCTCACCCCAG
TAGCCTTCATGGTAATCATCGGAGATGGCTTGCACAATCTGACCGATGGT
CTGGCCATAGGTGCAGCCTTCGCAAGTGATCCGGTCACTGGATTTGCTAC
CGCCTTTGCCGTTCTCTGCCATGAGTTGCCACACGAACTGGGCGACTTTG
CTCTGTTGCTGCAAACAGGTGTCTCCATGCGAAGAGCCGTCTATATGAAC
ATTGTTAGCTCAGTTCTTAGCTTTGTGGGCATGTCGGTGGGTCTCTTTAT
TGCTGGAATTGGAGACGGCATGACCCAATGGATTTATGCAGCCACCGCTG
GTTCCTTCCTGTATATTGCTTTTGCCGATCTGGTGCCCACAATGAGTGTG
GCCCACAATCCGGAAAAGGCCAAAGATCCAAAGGGTATAATAATACAAAT
TTTTGGTATCCTTCTGGGTGGACTGATAATGTTGGCTATTGCCCTCAATG
AACACGATTTAGAGGGCCTGTTCAAGAGCTTTTAAAAGCTTTCTAGACCA
T
BS19595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip71B-RC | 1719 | CG10006-PC | 1..1719 | 17..1735 | 8595 | 100 | Plus |
| Zip71B-RB | 1719 | CG10006-PB | 1..1719 | 17..1735 | 8595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip71B-RC | 2391 | CG10006-RC | 184..1903 | 17..1736 | 8600 | 100 | Plus |
| Zip71B-RB | 2225 | CG10006-RB | 184..1903 | 17..1736 | 8600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14996499..14997495 | 740..1736 | 4985 | 100 | Plus |
| 3L | 28110227 | 3L | 14996141..14996442 | 439..740 | 1495 | 99.7 | Plus |
| 3L | 28110227 | 3L | 14994581..14994865 | 159..443 | 1425 | 100 | Plus |
| 3L | 28110227 | 3L | 14992472..14992616 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:00:00 has no hits.
BS19595.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:13 Download gff for
BS19595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10006-RB | 184..1900 | 17..1733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:15 Download gff for
BS19595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10006-RB | 184..1900 | 17..1733 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:01 Download gff for
BS19595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip71B-RB | 184..1900 | 17..1733 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:01 Download gff for
BS19595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14992472..14992615 | 17..160 | 100 | -> | Plus |
| 3L | 14994583..14994865 | 161..443 | 100 | -> | Plus |
| 3L | 14996146..14996442 | 444..740 | 100 | -> | Plus |
| 3L | 14996500..14997492 | 741..1733 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:15 Download gff for
BS19595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14985572..14985715 | 17..160 | 100 | -> | Plus |
| arm_3L | 14987683..14987965 | 161..443 | 100 | -> | Plus |
| arm_3L | 14989246..14989542 | 444..740 | 100 | -> | Plus |
| arm_3L | 14989600..14990592 | 741..1733 | 100 | | Plus |
BS19595.pep Sequence
Translation from 16 to 1734
> BS19595.pep
MAQKQVLVLNLFCLGSLFFKTVPASTEYNKYVAQIFQKYGNGGTINFEGL
EHLMFSLNLGQIQFDPSHTIDQHRPQGYSNEMPHATNVTYYFEPTRVNAT
DEEALELQISPRGNHSNSQSEAEVPEFLEIHDPKHRHPRESSEPVAACLS
PKSLLSLIVNHNDLHKNIAYRKLLIKNDVSSTDGVHNSEEEYNEFINSVR
ITPRAFMKLCPALLAQIDNGVCKQPAVRSVNLNDKNQKIWYAWIYASITM
LILSACGLLGILLVPLMKSAAYQEILKFLVSIAVGTLAGDALMHLLPHAL
FKEEKHEEEVTGINPLESDHKHSNEAALLCGCTFLAALFMYMLENLIPLL
KGGKPGHGHSHGHGHSHGRSHGHMEKPAAKDAIDLPPPRELNVMLQEAKL
DEKTPDRPLTPVAFMVIIGDGLHNLTDGLAIGAAFASDPVTGFATAFAVL
CHELPHELGDFALLLQTGVSMRRAVYMNIVSSVLSFVGMSVGLFIAGIGD
GMTQWIYAATAGSFLYIAFADLVPTMSVAHNPEKAKDPKGIIIQIFGILL
GGLIMLAIALNEHDLEGLFKSF*
BS19595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip71B-PC | 572 | CG10006-PC | 1..572 | 1..572 | 2982 | 100 | Plus |
| Zip71B-PB | 572 | CG10006-PB | 1..572 | 1..572 | 2982 | 100 | Plus |
| Catsup-PA | 449 | CG10449-PA | 132..446 | 243..559 | 428 | 32.2 | Plus |
| foi-PD | 706 | CG6817-PD | 524..694 | 361..569 | 417 | 43.1 | Plus |
| foi-PC | 706 | CG6817-PC | 524..694 | 361..569 | 417 | 43.1 | Plus |
| foi-PD | 706 | CG6817-PD | 87..334 | 68..316 | 220 | 27.2 | Plus |
