Clone BS19611 Report

Search the DGRC for BS19611

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:196
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptObp83a-RC
Protein status:BS19611.pep: full length peptide match
Sequenced Size:557

Clone Sequence Records

BS19611.complete Sequence

557 bp assembled on 2011-01-04

GenBank Submission: KX801964

> BS19611.complete
GAAGTTATCAGTCGACATGGACCAGGAAGGACCACGCAGCAGCGGAAAGG
AGCGAAACGGAAAGAGCCACATTAAAATGGCTTTGAATGGCTTTGGTCGG
CGTGTCAGTGCGTCTGTCCTTTTAATCGCCTTGTCGCTGCTCAGCGGAGC
GCTGATCCTGCCGCCGGCTGCGGCGCAGCGTGACGAGAACTATCCACCGC
CGGGCATCCTGAAAATGGCCAAGCCCTTCCACGACGCGTGTGTGGAGAAG
ACGGGCGTAACCGAGGCTGCCATCAAGGAGTTCAGCGATGGGGAGATTCA
CGAGGACGAGAAGCTCAAATGCTACATGAACTGCTTCTTCCACGAGATCG
AAGTGGTGGACGACAATGGGGACGTGCATCTGGAGAAGCTCTTCGCCACG
GTACCGCTCTCCATGCGCGACAAGCTGATGGAGATGTCCAAGGGCTGCGT
CCATCCGGAGGGCGATACGCTGTGCCACAAGGCCTGGTGGTTCCACCAGT
GCTGGAAAAAGGCCGATCCCAAGCACTACTTCTTGCCGTGAAAGCTTTCT
AGACCAT

BS19611.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83a-RC 525 CG11421-PC 1..525 17..541 2625 100 Plus
Obp83a-RB 465 CG11421-PB 1..465 77..541 2325 100 Plus
Obp83a-RA 465 CG11421-PA 1..465 77..541 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83a-RC 823 CG11421-RC 156..681 17..542 2630 100 Plus
Obp83a-RB 885 CG11421-RB 218..743 17..542 2630 100 Plus
Obp83a-RA 839 CG11421-RA 172..697 17..542 2630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5972370..5972627 523..266 1290 100 Minus
3R 32079331 3R 5973209..5973382 190..17 870 100 Minus
3R 32079331 3R 5976271..5976540 535..269 460 78.9 Minus
3R 32079331 3R 5973054..5973129 266..191 380 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:44:03 has no hits.

BS19611.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:25 Download gff for BS19611.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp3-RA 172..695 17..540 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:40 Download gff for BS19611.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83a-RA 172..695 17..540 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:06 Download gff for BS19611.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83a-RA 172..695 17..540 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:06 Download gff for BS19611.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5972299..5972315 524..540 100 <- Minus
3R 5972370..5972626 267..523 100 <- Minus
3R 5973054..5973129 191..266 100 <- Minus
3R 5973209..5973382 17..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:40 Download gff for BS19611.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1798021..1798037 524..540 100 <- Minus
arm_3R 1798092..1798348 267..523 100 <- Minus
arm_3R 1798776..1798851 191..266 100 <- Minus
arm_3R 1798931..1799104 17..190 100   Minus

BS19611.pep Sequence

Translation from 16 to 540

> BS19611.pep
MDQEGPRSSGKERNGKSHIKMALNGFGRRVSASVLLIALSLLSGALILPP
AAAQRDENYPPPGILKMAKPFHDACVEKTGVTEAAIKEFSDGEIHEDEKL
KCYMNCFFHEIEVVDDNGDVHLEKLFATVPLSMRDKLMEMSKGCVHPEGD
TLCHKAWWFHQCWKKADPKHYFLP*

BS19611.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83a-PC 174 CG11421-PC 1..174 1..174 947 100 Plus
Obp83a-PB 154 CG11421-PB 1..154 21..174 841 100 Plus
Obp83a-PA 154 CG11421-PA 1..154 21..174 841 100 Plus
Obp83b-PA 141 CG11422-PA 9..140 46..173 524 70.5 Plus