BS19656.complete Sequence
3263 bp assembled on 2011-01-28
GenBank Submission: KX804049
> BS19656.complete
GAAGTTATCAGTCGACATGCCACAAATTAGTCCGAACGCACCGCTCGAGG
GAAACGTTTCGCCGCCACCGACGCAGCCCCATTTGGATGATAATCTGCAC
AACGGGAACGGGAACGGGAACGGCATCCACAGCAGCAGCAGCAACATTAA
CAAGCACGGCAGCAACATCAACGGCAACAACGATAGCAACCGCAGCAGTC
CTGCGAAGAGTCCCAAGCGCCCAGTGTCCTCCAGCTTCCGGATTCAGAAC
ACCAGCCGGTACGATAATGATGAGGAGGACTTAGCAGCCAGCGAGCAGGT
GGCTGGTGGAGATCGCCAGGTGCCGGATTATTGGCAGCAACGGAACGGTG
CGACCACTGGTGCAACCAGTGGGCGGCAGAGTCGCGCCATTAGTCCCGGG
TATCTGGACAACATGAGCGAGAACTCGGAGCAGCCGCCAGTGGTGCCGCT
GGTGCGATCTAAATCCCGTCCAGAAATTTCAAGTGCAGCGGCATCGCGAT
ATAATAATCTCTCCTATTGGAAGGCACGCCGTGTGGTGTTCTACCGGAAT
GGGGATCCATTCTTTCCGGGTGTGGAGCTGCGCTATCGTCCCGGACGGGA
TGTAACCTCACTGGACAATCTTCTCGATAAGATCTCGCCCAAGATGGACT
TGCCACGGGGTGCTCGATATGTGTTCTCCATGGACGGAGATCGAAAATAT
CATCTCGATGAACTGGAGGATGGAGCCTTCTATGTCGTATCCTCGTTCAA
GGCCTTCAAGCCTGCCAGCTACGGCAAGAAGAACGGGATGTGGTATGCAT
CGCCTGGAAATCAGGGATGGGGCTCCAAGCCCGCCAGTCGGAAGCCCTCA
ATAATGGAAGCGGATTTGGGCACATTATCGACCACATCAGGCTCGATAAA
GCGCAGCGCCGGCCGTGTGATACGCATCATCAATAATTTGGATCATTCGG
TGCAGTGTCGCGTTTTGCTGAACCTACGCACCTCGCAGCCGTTCGAGGAA
GTGCTAGAGGATTTGGGTCAAGTGCTGAAAATTAACGGAGCAAAGAAAAT
GTACACAGGCACTGGCCAGGAGGTCCGCAGCTTTTCCCAGCTACGGAATG
AGTTCGCCGACGTTGACACCTTCTACCTGGCCACGGGAACTGCCCTGATT
GCCGGCTCACCCATCCGGCGCTCCAGGTCCCGCCCCTCGGTGGTGGCCGC
CGCACCCATTTTGCCCACGGATGAGCTGCCCAAGGTGCCGCTGCGAGGAG
CCCGTCCGCGGAGCAAGAGCCGACCGCGGATCCTGTACGCTCCGGAGAGC
GAGATCCTGCGGCCGAACGGCGAGTACACGATGCTGGACATCATGAAGGA
GGAGCCCACCAAGGTCACAATCCGGGGACTGCGGCGCACCTTCTATCCGC
CCGTTCACCATGCGCCGGCCGACAATTCCCCGCCGGACAAAAAACTGCAA
CTCCAATGGGTCCATGGCTATCGCGGCATTGATGCGCGGCGAAATCTCTG
GGTTTTGCCCTCCGGAGAACTGCTCTACTACGTGGCTGCCGTGGCCGTAC
TCTTTGACCGCGACGAGGATGCACAGAGGCACTACACCGGACACACTGAG
GATATCATGTGCATGGATGTGCATCCCTCCAGGGAACTGGTTGCGTCTGG
ACAGAAAGCTGGACGAGATCGCAAGTCGCAGGCGCACGTCCGCATCTGGA
GCACCGAGTCCCTGCAGACGCTCTACGTCTTTGGCATGGGTGAACTGGAC
AGTGGGGTGACAGCAGTAGCCTTCTCGCAGCTGAACGGAGGTAGCTACAT
ACTGGCTGTGGACAGTGGACGCGAGAGCATTCTGTCCGTGTGGCAGTGGC
AATGGGGTCACCTGCTGGGCAAAGTGGCCACCCTGCAGGAGGGTTTGTCG
GGGGCTGCCTTCCACCCGTTGGACGATAATCTCATCATCACCCATGGACG
TGGTCACCTGGCCTTCTGGCACCGGCGCAAGGATGGCTTCTTTGAGCGCA
CGGACATCGTGAAACAGCCGTCGCGTTCCCATGTCACCAGTGTGCAATTC
GAGCCGGATGGCGATGTAATCACTGCTGATTCGGATGGGTTCATAACCAT
TTACTCGGTGGATTCCGATGGCGCCTACTTCGTCCGCACGGAGTTCGAGG
CGCACAACAAGGGCATCGGATGCCTGATCATGCTGGGCGAGGGCACCCTT
CTCTCCGGAGGCGAGAAAGATCGCAAGATCGCCGCCTGGGACTCCCTGCA
GAACTACAAGAAGATTGCCGATACAAAGCTCCCGGAGGCCGCCGGTGGAG
TACGTACCATCTATCCGCAGCGGCCCGGACGGAATGACGGGAACATTTAC
GTGGGCACCACGCGGAACAACATCCTGGAGGGCTCGCTGCAGCGCCGCTT
CACCCAGGTGGTCTTTGGCCACGGACGTCAACTGTGGGGATTGGCAGCCC
ATCCGGACGACGAGCTATACGCTACCGCAGGGCATGACAAGCACGTGGCC
CTGTGGCGCAAGAACAAGCTCATCTGGACCATTCAAACAGGTTATGAGTG
CGTGGCACTGGCATTCCATCCCTTCGGCACCTTGGCCGCCGGAAGCACCG
AAGGTCACCTGCTTGTCATCAACTGCGAAAATGGGGCAGTCATGCTGACC
CTGAGGGTATGCGGGTCGCCCCTTAATTGCGTGGCTTACAACCAGGTTGG
CGACATGATAGCCATGGGCTCCCAAAACGGTAGCATTTATCTGTTCCGCG
TGTCGCGCGACGGCTTCTCGTACAAGAAGGTGAACAAGATCCGAGGATCG
CAGCCGCTGACCCACTTGGACTGGAGCATGGACGGCAACTTTGTGCAGAC
GGTGACCATCGATTTCGACCTGCTCTTTTGGGATGCCAAGTCCTTGTCCC
CGGAGCGCAGTCCCATTGCCATGAAGGACGTCAAGTGGCTGACCAACAAC
TGCACCGTGGGCTTCCTGGTGGCGGGCCAGTGGAGCAACCGCTACTATAG
CACCACCAACACCATCGTGGCCACCTGCAGTCGCTCCGCCGCCCACGACA
TGCTCGCATCCGGTGACGCCGAGGGCTATCTAAGATTGTTCAGATATCCC
TGCATCTCGCCGCGCGCCGAGTTTCACGAGTCGAAGGTGTACTCCGGGAT
GCTGGCCTGCGTCCGCTTCCTGTGCGGCGACCACACGCTCATCACCGTGG
GCGGCACAGATGCGTCCCTGATGGTGTGGGACATTGTCGAGGAATAGAAG
CTTTCTAGACCAT
BS19656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCX-EMAP-RC | 3231 | CG42247-PC | 1..3231 | 17..3247 | 16155 | 100 | Plus |
| DCX-EMAP-RG | 3357 | CG42247-PG | 1..3231 | 17..3247 | 16155 | 100 | Plus |
| DCX-EMAP-RF | 2556 | CG42247-PF | 69..2556 | 760..3247 | 12440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCX-EMAP-RC | 4392 | CG42247-RC | 433..3663 | 17..3247 | 16155 | 100 | Plus |
| DCX-EMAP-RG | 4392 | CG42247-RG | 433..3663 | 17..3247 | 16155 | 100 | Plus |
| DCX-EMAP-RF | 3017 | CG42247-RF | 239..2726 | 760..3247 | 12440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14904237..14904980 | 17..760 | 3720 | 100 | Plus |
| 3L | 28110227 | 3L | 14940998..14941417 | 2277..2696 | 2100 | 100 | Plus |
| 3L | 28110227 | 3L | 14940517..14940915 | 1880..2278 | 1995 | 100 | Plus |
| 3L | 28110227 | 3L | 14941506..14941903 | 2696..3093 | 1990 | 100 | Plus |
| 3L | 28110227 | 3L | 14939406..14939796 | 1071..1461 | 1955 | 100 | Plus |
| 3L | 28110227 | 3L | 14931723..14931919 | 759..955 | 985 | 100 | Plus |
| 3L | 28110227 | 3L | 14940123..14940295 | 1611..1783 | 865 | 100 | Plus |
| 3L | 28110227 | 3L | 14942020..14942178 | 3089..3247 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 14939857..14940006 | 1462..1611 | 750 | 100 | Plus |
| 3L | 28110227 | 3L | 14939008..14939129 | 953..1074 | 610 | 100 | Plus |
| 3L | 28110227 | 3L | 14940356..14940452 | 1783..1879 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:10:59 has no hits.
BS19656.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:41 Download gff for
BS19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42247-RC | 1..3231 | 17..3247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:15 Download gff for
BS19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCX-EMAP-RG | 433..3663 | 17..3247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:01 Download gff for
BS19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DCX-EMAP-RG | 433..3663 | 17..3247 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:01 Download gff for
BS19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14904237..14904980 | 17..760 | 100 | -> | Plus |
| 3L | 14931725..14931919 | 761..955 | 100 | -> | Plus |
| 3L | 14939011..14939127 | 956..1072 | 100 | -> | Plus |
| 3L | 14939408..14939796 | 1073..1461 | 100 | -> | Plus |
| 3L | 14939857..14940006 | 1462..1611 | 100 | -> | Plus |
| 3L | 14940124..14940295 | 1612..1783 | 100 | -> | Plus |
| 3L | 14940357..14940452 | 1784..1879 | 100 | -> | Plus |
| 3L | 14940517..14940915 | 1880..2278 | 100 | -> | Plus |
| 3L | 14941000..14941417 | 2279..2696 | 100 | -> | Plus |
| 3L | 14941507..14941903 | 2697..3093 | 100 | -> | Plus |
| 3L | 14942025..14942178 | 3094..3247 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:15 Download gff for
BS19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14897337..14898080 | 17..760 | 100 | -> | Plus |
| arm_3L | 14924825..14925019 | 761..955 | 100 | -> | Plus |
| arm_3L | 14932111..14932227 | 956..1072 | 100 | -> | Plus |
| arm_3L | 14932508..14932896 | 1073..1461 | 100 | -> | Plus |
| arm_3L | 14932957..14933106 | 1462..1611 | 100 | -> | Plus |
| arm_3L | 14933224..14933395 | 1612..1783 | 100 | -> | Plus |
| arm_3L | 14933457..14933552 | 1784..1879 | 100 | -> | Plus |
| arm_3L | 14933617..14934015 | 1880..2278 | 100 | -> | Plus |
| arm_3L | 14934100..14934517 | 2279..2696 | 100 | -> | Plus |
| arm_3L | 14934607..14935003 | 2697..3093 | 100 | -> | Plus |
| arm_3L | 14935125..14935278 | 3094..3247 | 100 | | Plus |
BS19656.pep Sequence
Translation from 16 to 3246
> BS19656.pep
MPQISPNAPLEGNVSPPPTQPHLDDNLHNGNGNGNGIHSSSSNINKHGSN
INGNNDSNRSSPAKSPKRPVSSSFRIQNTSRYDNDEEDLAASEQVAGGDR
QVPDYWQQRNGATTGATSGRQSRAISPGYLDNMSENSEQPPVVPLVRSKS
RPEISSAAASRYNNLSYWKARRVVFYRNGDPFFPGVELRYRPGRDVTSLD
NLLDKISPKMDLPRGARYVFSMDGDRKYHLDELEDGAFYVVSSFKAFKPA
SYGKKNGMWYASPGNQGWGSKPASRKPSIMEADLGTLSTTSGSIKRSAGR
VIRIINNLDHSVQCRVLLNLRTSQPFEEVLEDLGQVLKINGAKKMYTGTG
QEVRSFSQLRNEFADVDTFYLATGTALIAGSPIRRSRSRPSVVAAAPILP
TDELPKVPLRGARPRSKSRPRILYAPESEILRPNGEYTMLDIMKEEPTKV
TIRGLRRTFYPPVHHAPADNSPPDKKLQLQWVHGYRGIDARRNLWVLPSG
ELLYYVAAVAVLFDRDEDAQRHYTGHTEDIMCMDVHPSRELVASGQKAGR
DRKSQAHVRIWSTESLQTLYVFGMGELDSGVTAVAFSQLNGGSYILAVDS
GRESILSVWQWQWGHLLGKVATLQEGLSGAAFHPLDDNLIITHGRGHLAF
WHRRKDGFFERTDIVKQPSRSHVTSVQFEPDGDVITADSDGFITIYSVDS
DGAYFVRTEFEAHNKGIGCLIMLGEGTLLSGGEKDRKIAAWDSLQNYKKI
ADTKLPEAAGGVRTIYPQRPGRNDGNIYVGTTRNNILEGSLQRRFTQVVF
GHGRQLWGLAAHPDDELYATAGHDKHVALWRKNKLIWTIQTGYECVALAF
HPFGTLAAGSTEGHLLVINCENGAVMLTLRVCGSPLNCVAYNQVGDMIAM
GSQNGSIYLFRVSRDGFSYKKVNKIRGSQPLTHLDWSMDGNFVQTVTIDF
DLLFWDAKSLSPERSPIAMKDVKWLTNNCTVGFLVAGQWSNRYYSTTNTI
VATCSRSAAHDMLASGDAEGYLRLFRYPCISPRAEFHESKVYSGMLACVR
FLCGDHTLITVGGTDASLMVWDIVEE*
BS19656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DCX-EMAP-PC | 1076 | CG42247-PC | 1..1076 | 1..1076 | 5697 | 100 | Plus |
| DCX-EMAP-PG | 1118 | CG42247-PG | 1..1076 | 1..1076 | 5697 | 100 | Plus |
| DCX-EMAP-PF | 851 | CG42247-PF | 6..851 | 231..1076 | 4391 | 98.3 | Plus |
| DCX-EMAP-PD | 819 | CG13466-PA | 1..819 | 258..1076 | 4333 | 100 | Plus |
