BS19680.complete Sequence
4322 bp assembled on 2011-01-28
GenBank Submission: KX802324
> BS19680.complete
GAAGTTATCAGTCGACATGCGTGTGGTTGGGTGGCTCAGAGGTGGCTTAA
TGCTCGCCCTGGCCGTAATGGTAACGCAGGCACGTTTCATTGCGAAAAGA
GAAACCACCGGCTTGGAGCAGGCGATGGCTTCCACTTCCACTGACCCTGA
CATTGTTAAGGCGCCCAGGGAAAGTGGGATCGGCAGGGAACCGGTCGCCA
TAAAGGCAGAATCGGATATGTTCAGCTCACAAACCAATATTGAAGATGAA
AAAAGCGCAAAAACTGTGGATCAAACCGAAACCCAAACTGCTAGTCCGAA
AGAGAATCTCAATGTCAAGCAAACGACGGCAGCCTTCGAGAAAAATGAGT
CCAGTAACACCACGGAATCTCACTTAAATGGAGCTCAAGTGGATCCCGTA
AAAGAACTAAAGGACACGGAAACTTCTGCAGATACTGTCAAGGAAGAGTC
AAGCACCACAACCACGTCTCAGTTGGATCAAAACCCGACCAATGTGACAG
ATAAGAAATCCACAGAAGCTCAGTTTAAAGATGAACGTCTTTCAAAAGAG
ATTTTAAGCACAACCACTGAACAAATTTTGTTAACCGAGAAAGCCCTTCA
AAAATATGTAGTCATAACGAATTCTCCTTTAAGAGGAGAGGCACAACCTG
AGATTAAGGATAAAACCTCAAAATCTGCGACAAGCGAAAAGTCCACGCTC
CCATTAAAACCAGTAACTATTGAAGTTCCGAGCACCACCACAGAGGGAGT
GTTCAACACCACAACCACTCGATCTTCCGATCATGGCCGTTCCATGCAGT
ATTCATCCACCACTGAAGAATCGAGCCGATCTTCTCCTGCTTCAGTAACG
CCCATGAAGTTGATACCCCTACCCATGACTTCTACACCATCCAGCACTAC
TTCCACATCGACGCCTTTGCCAACCACTGCAGTTTCCTTCGCCTCAAATG
AGAATGTCATCGAGGAGTCCACCTCAAAGTCAGAGGTCCGTCAGTTGCCT
GAGAAGCGAGCCAAGTTTATAAGTGAAAACTCCACAAATGCCCAGCAACT
TACACTGCCCAACACGGCTGAGGTTTGGAGTCTTGCTGGAATGAAGGCGG
TACCGAAGGCACCGCTAACTACCACTACCAGCGTACCACTCCTTAACCAC
ACTGATCTCGCAAATGATATAGATATGCCCCTCAATAAAACGGAGCTGCA
CAAGGAGAAGAATCTCCTGGATTGGATGAACATTGCCATGCTGCCATTGA
CGCCCGAGAATCGCACCGAATTTGTGGTCAGAACCACTCTGGATGCCACC
GAGGGAGCCACCCAGGCTACTACCGAAGCTTTGGTAGAGGAAACCCATTC
CAAAAGTGATATTACAGTGGGATTGGAACAGGATAACGTCACAACAGCAC
GAACAATGCCTTCAACACCTGATCCTGGATCAATGGACCTCAATATGACG
ACCACAACTGTGCGTACGCAACAATTGGAAGTTCCATTAGTCAAAAAGAT
GTCCGATGCAGCCAATGCCAAGTTGATAGAGGCGGTTACAGAGCCTCAAA
GGGAAACAGAAGCAGCAACAGAGGCTGCAACATTTGTTACATTACCCGAG
AAACTTGCAACATTCGGCATAACAGCGAGGGTTGATTCAACGCAAACGGA
ACTGTTGAATGTTACCACAGCAGCAGCGGCAACAGAGTCAGGTGAAATGT
CTAAGGCAAATTCAACAGATACGTTATCAGCAATGACAAGCACAACTACT
ACCACAGCAAGGCCCATGTCTGTGGAACATGTAACGCCTGAACAAGACAT
GGAGGCAGCAACATCACTGGCCACGACAGCTGCAACATCAAGTGGAACTA
CGGAGGCAGCAGCAACATCATCGACAACGGCAGCAACTCCGGTTGTCTCA
GAGGCAGCAACAGCCGCAGAAGCATCGGCAACATCTGAGGCTACAACAGC
TGCAACATTAAGTGTTGCAACCACCGCCGCCAGCACAACCGAAATAGCAA
TGAAAGCGACTCAAATCAGCAACATTCGCGACGACAACGACGATAACAGT
AACGACGTCATCGTTGCCACAACCAAATTTCCAGAGAGCGAGCAGGCAGC
AACAACGGCAAGCGTTGAGCCAACAACGACATCGGTTAGTGTGCGAGTGG
CTGGCGAGGTGAGCACTTCGATTCGGCCAGAAATCATCGTTACCAGTACG
CGGAATAGTACGATCGTGGACACAAGTACATCGGCGACAAGTGTAGCAAC
ACCCACGCAAACGGAAATTGCGCAAATAAGCAATGAAGTGAATTTGGAGG
CAGTGACAGTGAAGACGCGCGACGGTTTGAGCGATACGAATGAGTTAAGA
ACAGCTGAGAAAACCGATAACGCGGTCAATAACAGTGTGGCCATAACAGA
GAGCGACTTGGGGGCATTGGCAACAGCAGTGGAAACCAACCCCACGACAA
CCAACAGTCTGCTCAGTGACGTGAGCAAGTTAAGCAAGGAGCACGAGTCC
TCGCTGGAGACCAATAACATAGGCGAGGCGCCTCCCGAATCGACGACACC
AGCAGCACCAGCAACTGTTGCTGTTGCAACGGATGAGAGCACAGCAGCGC
CGGCAGCAACAGGTGGCCAGGAAATCGTGAGGGAGGGTCAACATCATGAC
GGACAACAGGTGGCTGATGAGCAGGACACCGAGCAGCAGTTAGCCAAGAC
GACGATGGCGGTGACAACGACAACAACCAGTGCGACAACCACTACAACCA
GTACTACAACAACCACAACAGAGACGCCCTTAACCACTACAACAATGCAG
CCAGTGGAGATAAGTCTACTGGACGATAGCACCACAACGACAACCACAAC
ACCTGCACCACCCGTATACTTTGAGTCCTCCACGGTGGCCAGCACCACCA
TAAGGAGCAGCACCACCATGCTGCCGGAGACGACAACCGCGTCCACACAG
TCACCAAGCGAAATGCCACCCACATTCATGGCTCCATATCCCAACGAACT
GGATCACATGCAGACCAATGCCCAGGACAATGGGACGGACGTGAATGTGA
TTATAGCCATCACGGTGAGCGTGATTGGTGTGGTGGCCCTCATTCTGCTG
GTGGCATTCCTCTACTTGATGCGCAAACGCCAGAAGCAGACGTCCTACGG
CCAAAGGTGTCGCCCTGTGAGCTTGGATGCCTACTCCCTGGACAACGTTT
CGGTGCTGGGCAGTGTGAGGCGCAAGGGTCGCGATATGAGAGCCTCCAAG
CGCACCTATGGCAATGCAGCCTTCGATGATCCCTCGCTGCGGCACAATCT
ACTGACCGCCAGCGAGCTGGCCCGCTTCGTGGAGCGGCGCTCAGACGTCT
TCGAGGAGTTCCGGGACGTGCCGCAGATCATAGCCAGGGCGGACGAAGTG
CCACCTGGTTGTGAGGACAAGAACCGCTACGCCAACGTGATTCCGCTTCC
TGAGACGCGGGTGGTGCTCCAGCGGCAAGGCGACGATGACAAAACGGAAT
ACATTAATGCCAATTATGTGCGGGGCCCGAGGGATGCACCCAACTACTAC
ATAGCCTGCCAGGCGCCGCTGGAGAGCACGACCAGCGATTTCTGGCGCAT
GATCTGGGAACAGCAGTCGCGGGTGATCATCCAGGCGACGGATCTCAGTG
AGAACGGAATTGAGAGGTGCGCCGAGTACCTGCCACCGTCGGCGACTCTG
GACAATCATAGCAGCTATGGCGATTACCAGGTGACCCTCAAGCATCGCGA
AGTCAAGGATCGCTATGCCATTTCCACATTGGTTCTGAAGCGAGTGGATG
GCGAGGAGAGCCGTGAGCTCACCCACTACTGGTACAAATGGCCTGAGGCG
GGTGTACCGGCCGAGGAGGCGCCCATCATCGCCATGCTGCTGGAAGCGCG
ATCCTCGCTGAAGTCCTACTCCCTTGAGCAGGCCAACGAGCTGCGCGAGA
AGTCCGCGACCCTGGAGACGTCAATGGATGCGGACGGCAGCAAAGCCGAG
GCGGGCAGCACGTCCAGCCACGAGATTAATGGAAACATCTCAAGTCGAAG
CGGAACACGAAGTCAGCAGGGACCGCTAACCGTTCACTGTTCTCCAGGCA
CGGGACGAACCGGTACCATTATAGCGTCGGACATGGCCATCCGCAGTCTG
GAAACACCGAAGCGGTCCGTGGACATCCCCCAACTGGTTTACTACGTGCG
ACGCGGACGTGCCAGCGCCGTACAGACCAAGGAGCAGTATGAATTTATCT
ACAAGGTGGCCAGCATGTATGCGGCCAAGATCACAAATCTGTCCAATGAC
AACTGAAAGCTTTCTAGACCAT
BS19680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42327-RE | 4290 | CG42327-PE | 1..4290 | 17..4306 | 21450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42327-RE | 5541 | CG42327-RE | 740..5033 | 17..4310 | 21470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11667572..11670981 | 17..3426 | 17050 | 100 | Plus |
| 3R | 32079331 | 3R | 11672576..11673124 | 3523..4071 | 2745 | 100 | Plus |
| 3R | 32079331 | 3R | 11673227..11673466 | 4071..4310 | 1200 | 100 | Plus |
| 3R | 32079331 | 3R | 11671403..11671501 | 3426..3524 | 495 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:10:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7003 | 1816..2111 | 300 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2629 | 1808..2131 | 287 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7198 | 1805..2267 | 284 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2999 | 1668..2049 | 281 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2866 | 1805..2302 | 280 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2984 | 1664..2279 | 276 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..7062 | 1805..2113 | 270 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2629 | 2538..2860 | 244 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2672 | 1675..2084 | 243 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2544 | 1857..2082 | 243 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2775..2992 | 1824..2063 | 240 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7034 | 1736..2062 | 237 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6920 | 1864..2073 | 227 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2525 | 1904..2111 | 224 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6951 | 1710..1960 | 215 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6669..7167 | 1611..2113 | 201 | 52.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1153 | 1858..1961 | 198 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6923 | 1899..2109 | 188 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2279..2668 | 1494..1888 | 174 | 54.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1151 | 1827..1914 | 152 | 63.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3242..3401 | 1802..1969 | 145 | 57.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1145 | 1806..1887 | 139 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1592 | 1806..1888 | 136 | 69 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3349 | 1830..1957 | 135 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1520..1586 | 1856..1919 | 130 | 68.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1177 | 1664..1761 | 126 | 60 | Plus |
BS19680.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:40 Download gff for
BS19680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42327-RE | 736..5024 | 17..4305 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:56 Download gff for
BS19680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42327-RE | 736..5024 | 17..4305 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:45 Download gff for
BS19680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42327-RE | 740..5028 | 17..4305 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:45 Download gff for
BS19680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11667572..11670981 | 17..3426 | 100 | -> | Plus |
| 3R | 11671404..11671500 | 3427..3523 | 100 | -> | Plus |
| 3R | 11672577..11673124 | 3524..4071 | 100 | -> | Plus |
| 3R | 11673228..11673461 | 4072..4305 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:56 Download gff for
BS19680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7493294..7496703 | 17..3426 | 100 | -> | Plus |
| arm_3R | 7497126..7497222 | 3427..3523 | 100 | -> | Plus |
| arm_3R | 7498299..7498846 | 3524..4071 | 100 | -> | Plus |
| arm_3R | 7498950..7499183 | 4072..4305 | 100 | | Plus |
BS19680.pep Sequence
Translation from 16 to 4305
> BS19680.pep
MRVVGWLRGGLMLALAVMVTQARFIAKRETTGLEQAMASTSTDPDIVKAP
RESGIGREPVAIKAESDMFSSQTNIEDEKSAKTVDQTETQTASPKENLNV
KQTTAAFEKNESSNTTESHLNGAQVDPVKELKDTETSADTVKEESSTTTT
SQLDQNPTNVTDKKSTEAQFKDERLSKEILSTTTEQILLTEKALQKYVVI
TNSPLRGEAQPEIKDKTSKSATSEKSTLPLKPVTIEVPSTTTEGVFNTTT
TRSSDHGRSMQYSSTTEESSRSSPASVTPMKLIPLPMTSTPSSTTSTSTP
LPTTAVSFASNENVIEESTSKSEVRQLPEKRAKFISENSTNAQQLTLPNT
AEVWSLAGMKAVPKAPLTTTTSVPLLNHTDLANDIDMPLNKTELHKEKNL
LDWMNIAMLPLTPENRTEFVVRTTLDATEGATQATTEALVEETHSKSDIT
VGLEQDNVTTARTMPSTPDPGSMDLNMTTTTVRTQQLEVPLVKKMSDAAN
AKLIEAVTEPQRETEAATEAATFVTLPEKLATFGITARVDSTQTELLNVT
TAAAATESGEMSKANSTDTLSAMTSTTTTTARPMSVEHVTPEQDMEAATS
LATTAATSSGTTEAAATSSTTAATPVVSEAATAAEASATSEATTAATLSV
ATTAASTTEIAMKATQISNIRDDNDDNSNDVIVATTKFPESEQAATTASV
EPTTTSVSVRVAGEVSTSIRPEIIVTSTRNSTIVDTSTSATSVATPTQTE
IAQISNEVNLEAVTVKTRDGLSDTNELRTAEKTDNAVNNSVAITESDLGA
LATAVETNPTTTNSLLSDVSKLSKEHESSLETNNIGEAPPESTTPAAPAT
VAVATDESTAAPAATGGQEIVREGQHHDGQQVADEQDTEQQLAKTTMAVT
TTTTSATTTTTSTTTTTTETPLTTTTMQPVEISLLDDSTTTTTTTPAPPV
YFESSTVASTTIRSSTTMLPETTTASTQSPSEMPPTFMAPYPNELDHMQT
NAQDNGTDVNVIIAITVSVIGVVALILLVAFLYLMRKRQKQTSYGQRCRP
VSLDAYSLDNVSVLGSVRRKGRDMRASKRTYGNAAFDDPSLRHNLLTASE
LARFVERRSDVFEEFRDVPQIIARADEVPPGCEDKNRYANVIPLPETRVV
LQRQGDDDKTEYINANYVRGPRDAPNYYIACQAPLESTTSDFWRMIWEQQ
SRVIIQATDLSENGIERCAEYLPPSATLDNHSSYGDYQVTLKHREVKDRY
AISTLVLKRVDGEESRELTHYWYKWPEAGVPAEEAPIIAMLLEARSSLKS
YSLEQANELREKSATLETSMDADGSKAEAGSTSSHEINGNISSRSGTRSQ
QGPLTVHCSPGTGRTGTIIASDMAIRSLETPKRSVDIPQLVYYVRRGRAS
AVQTKEQYEFIYKVASMYAAKITNLSNDN*
BS19680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42327-PE | 1429 | CG42327-PE | 1..1429 | 1..1429 | 7109 | 100 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 84..768 | 230..986 | 475 | 23.2 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 225..1120 | 79..985 | 458 | 23.1 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 179..1056 | 92..985 | 455 | 24.1 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 219..1152 | 29..985 | 446 | 23.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 150..719 | 417..990 | 444 | 23.9 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 71..992 | 79..985 | 429 | 23.2 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 227..1143 | 60..1006 | 414 | 21.6 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 58..848 | 154..985 | 413 | 24.7 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 356..1210 | 87..1001 | 413 | 24.2 | Plus |
| CG46026-PA | 666 | CG46026-PA | 119..652 | 416..990 | 411 | 26.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 87..789 | 200..960 | 398 | 21.7 | Plus |
| CG46026-PA | 666 | CG46026-PA | 142..666 | 423..977 | 375 | 24.6 | Plus |
| CG46026-PA | 666 | CG46026-PA | 116..617 | 512..979 | 371 | 27.2 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 112..769 | 103..812 | 370 | 21.4 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 51..736 | 229..985 | 322 | 22.6 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 182..818 | 70..775 | 317 | 21.3 | Plus |
| CG46026-PA | 666 | CG46026-PA | 126..658 | 265..815 | 313 | 23.5 | Plus |
| CG46026-PA | 666 | CG46026-PA | 143..662 | 217..749 | 295 | 24.6 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 49..528 | 465..985 | 286 | 23.7 | Plus |
| CG46026-PA | 666 | CG46026-PA | 118..666 | 23..624 | 263 | 24.9 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 219..790 | 30..666 | 262 | 21 | Plus |
| CG46026-PA | 666 | CG46026-PA | 127..666 | 83..643 | 250 | 24.4 | Plus |
| Sgs1-PA | 1286 | CG3047-PA | 10..320 | 660..985 | 188 | 24.3 | Plus |
| Muc96D-PA | 881 | CG31439-PA | 144..239 | 895..990 | 172 | 41.7 | Plus |
