BS19693.complete Sequence
2587 bp assembled on 2011-01-28
GenBank Submission: KX801653
> BS19693.complete
GAAGTTATCAGTCGACATGAACACCAGCCAGACAGCTGCCGGCAATCGCA
TCACCTTCACCAGCCAGCCGCTGCCCAATGGCACCATCAGCATAGCCGGC
AATCCCGGCGCGGTCATCTCCACGGCCCAGCTACCGAATACCACCACCAT
CAAGACGATCCAGGCGGGGATCGGTGGTCAGCATCAGGGACTTCAGCAGG
TGCATCATGTCCAACAGCAGCAGCAGTCGCAACAGCAACAACAGCAGCAA
CAGCAGACGCAATCCGCCGGTCAACCGCTGCTCAATTCAATGCTGCCGGC
TGGCGTGGTGGTGGGCATGCGCCAACAGGCGCCGTCACAGCAGCAGCAGA
AGAATGTGCCCACCAACCCGCTCAGTCGCGTGGTGATCAACTCCCACATG
GCGGGCGTGAGACCGCAGAGTCCATCGTCTATGACCAACACGACCGCCAC
CAGCAACATCATTGTCAATTCGGTGGCAAGCAGTGGATATGCAAACTCTT
CGCAGCCGCCGCATCTGACGCAACTAAATGCGCAGGCGCCACAACTGCCG
CAGATTACGCAGATTCAAACAATACCGGCCCAGCAGTCTCAGCAGCAGCA
GGTGAACAATGTAAGCTCCGCGGGAGGAACGGCAACGGCGGTCAGCAGTA
CGACGGCAGCGACGACGACGCAGCAGGGCAATACCAAAGAAAAGTGTCGC
AAGTTTCTAGCCAATTTAATCGAATTGTCGACACGGGAACCGAAGCCGGT
GGAGAAGAACGTGCGCACCCTCATCCAGGAGCTGGTCAATGCGAATGTCG
AGCCGGAGGAGTTTTGTGACCGCCTGGAGCGCTTGCTCAACGCCAGCCCG
CAGCCGTGTTTGATTGGATTCCTTAAGAAGAGTTTGCCTCTGCTACGACA
AGCCCTCTACACAAAGGAGCTGGTCATCGAAGGCATTAAACCTCCGCCGC
AGCACGTTCTCGGCCTGGCCGGACTCTCTCAACAGTTGCCTAAAATCCAA
GCGCAAATCCGTCCGATCGGTCCTAGCCAGACAACGACCATTGGACAGAC
GCAGGTGCGTATGATAACGCCGAATGCCTTGGGCACGCCGCGACCCACCA
TTGGCCACACCACGATATCGAAGCAGCCACCGAATATTCGGTTGCCTACG
GCCCCGCGTCTCGTCAACACTGGAGGAATTCGCACCCAGATACCCTCGTT
GCAGGTGCCTGGTCAGGCGAACATTGTGCAAATACGTGGACCGCAGCATG
CTCAGCTGCAGCGTACTGGATCGGTCCAGATCCGGGCCACCACTCGTCCG
CCAAACAGTGTGCCCACCGCGAACAAACTCACTGCCGTCAAGGTGGGACA
GACGCAAATCAAAGCGATTACGCCCAGCCTGCATCCACCCTCGCTGGCGG
CAATCTCAGGTGGACCACCGCCGACACCCACGCTGTCTGTTTTGTCTACG
TTGAACTCCGCCTCGACCACAACGCTGCCCATACCATCGTTACCCACGGT
CCACCTTCCCCCCGAAGCTCTTCGAGCCCGTGAGCAGATGCAAAATTCGC
TGAACCACAACAGCAATCACTTCGATGCAAAACTGGTGGAGATCAAGGCG
CCGTCGCTGCATCCGCCGCACATGGAGCGGATCAACGCATCTCTCACACC
GATTGGAGCCAAGACGATGGCAAGGCCGCCGCCTGCGATCAACAAGGCGA
TAGGGAAAAAGAAACGCGACGCCATGGAAATGGACGCCAAATTGAACACA
TCGAGCGGAGGAGCGGCGTCCGCTGCGAACTCGTTTTTCCAGCAGAGCTC
CATGTCCTCGATGTACGGTGACGATGATATCAACGATGTTGCCGCCATGG
GAGGTGTTAACTTGGCGGAGGAGTCGCAGCGAATTCTCGGCTGTACCGAA
AACATCGGCACGCAGATTCGATCCTGCAAAGATGAGGTTTTTCTTAATCT
CCCCTCGCTGCAAGCTAGAATACGGGCAATTACTTCGGAGGCGGGACTGG
ATGAGCCGTCGCAGGATGTGGCCGTTCTGATATCGCACGCCTGTCAGGAG
CGCCTGAAGAACATCGTTGAGAAGTTGGCTGTGATAGCGGAGCACCGCAT
TGATGTCATCAAGTTGGATCCACGCTATGAGCCCGCCAAGGATGTGCGCG
GTCAGATCAAGTTTCTCGAGGAGCTGGACAAGGCCGAGCAGAAGCGACAC
GAGGAACTGGAGCGTGAGATGCTGCTGCGGGCAGCCAAGTCACGGTCGAG
GGTGGAAGATCCCGAGCAGGCCAAGATGAAGGCGAGGGCCAAGGAGATGC
AACGCGCCGAAATGGAGGAGTTGCGTCAACGAGATGCCAATCTGACGGCG
CTGCAGGCGATTGGACCTCGGAAAAAGCTGAAGCTGGACGGCGAAACAGT
CAGTTCGGGAGCGGGTTCAAGTGGCGGCGGAGTGCTAAGCAGCTCGGGAT
CTGCGCCGACGACGTTACGGCCTCGCATAAAACGTGTGAACCTGCGCGAC
ATGCTCTTCTACATGGAGCAAGAGCGGGAGTTCTGTCGCAGTTCCATGCT
GTTCAAGACATACCTCAAGTGAAACTTTCTAGACCAT
BS19693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf4-RD | 2556 | CG5444-PD | 1..2556 | 17..2572 | 12705 | 99.8 | Plus |
| Taf4-RC | 2556 | CG5444-PC | 1..2556 | 17..2572 | 12705 | 99.8 | Plus |
| Taf4-RI | 2766 | CG5444-PI | 622..2766 | 428..2572 | 10650 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf4-RD | 4166 | CG5444-RD | 315..2870 | 17..2572 | 12705 | 99.8 | Plus |
| Taf4-RC | 4423 | CG5444-RC | 572..3127 | 17..2572 | 12705 | 99.8 | Plus |
| Taf4-RI | 4226 | CG5444-RI | 786..2930 | 428..2572 | 10650 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16118506..16119400 | 1219..2113 | 4430 | 99.7 | Plus |
| 3L | 28110227 | 3L | 16117544..16118108 | 427..991 | 2810 | 99.8 | Plus |
| 3L | 28110227 | 3L | 16114472..16114721 | 17..266 | 1250 | 100 | Plus |
| 3L | 28110227 | 3L | 16118172..16118399 | 992..1219 | 1140 | 100 | Plus |
| 3L | 28110227 | 3L | 16119456..16119632 | 2112..2288 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 16115669..16115830 | 266..427 | 810 | 100 | Plus |
| 3L | 28110227 | 3L | 16119913..16120072 | 2413..2572 | 800 | 100 | Plus |
| 3L | 28110227 | 3L | 16119691..16119818 | 2287..2414 | 625 | 99.2 | Plus |
Blast to na_te.dros performed 2014-11-26 16:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2422 | 179..255 | 205 | 74 | Plus |
BS19693.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:47 Download gff for
BS19693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf4-RD | 304..2858 | 17..2571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:09 Download gff for
BS19693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf4-RC | 572..3126 | 17..2571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:34 Download gff for
BS19693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taf4-RC | 572..3126 | 17..2571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:34 Download gff for
BS19693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16114472..16114720 | 17..265 | 100 | -> | Plus |
| 3L | 16115669..16115830 | 266..427 | 100 | -> | Plus |
| 3L | 16117545..16118108 | 428..991 | 99 | -> | Plus |
| 3L | 16118172..16118399 | 992..1219 | 100 | -> | Plus |
| 3L | 16118507..16119400 | 1220..2113 | 99 | -> | Plus |
| 3L | 16119458..16119631 | 2114..2287 | 100 | -> | Plus |
| 3L | 16119692..16119817 | 2288..2413 | 99 | -> | Plus |
| 3L | 16119914..16120071 | 2414..2571 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:09 Download gff for
BS19693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16107572..16107820 | 17..265 | 100 | -> | Plus |
| arm_3L | 16108769..16108930 | 266..427 | 100 | -> | Plus |
| arm_3L | 16110645..16111208 | 428..991 | 99 | -> | Plus |
| arm_3L | 16111272..16111499 | 992..1219 | 100 | -> | Plus |
| arm_3L | 16111607..16112500 | 1220..2113 | 99 | -> | Plus |
| arm_3L | 16112558..16112731 | 2114..2287 | 100 | -> | Plus |
| arm_3L | 16112792..16112917 | 2288..2413 | 99 | -> | Plus |
| arm_3L | 16113014..16113171 | 2414..2571 | 100 | | Plus |
BS19693.pep Sequence
Translation from 16 to 2571
> BS19693.pep
MNTSQTAAGNRITFTSQPLPNGTISIAGNPGAVISTAQLPNTTTIKTIQA
GIGGQHQGLQQVHHVQQQQQSQQQQQQQQQTQSAGQPLLNSMLPAGVVVG
MRQQAPSQQQQKNVPTNPLSRVVINSHMAGVRPQSPSSMTNTTATSNIIV
NSVASSGYANSSQPPHLTQLNAQAPQLPQITQIQTIPAQQSQQQQVNNVS
SAGGTATAVSSTTAATTTQQGNTKEKCRKFLANLIELSTREPKPVEKNVR
TLIQELVNANVEPEEFCDRLERLLNASPQPCLIGFLKKSLPLLRQALYTK
ELVIEGIKPPPQHVLGLAGLSQQLPKIQAQIRPIGPSQTTTIGQTQVRMI
TPNALGTPRPTIGHTTISKQPPNIRLPTAPRLVNTGGIRTQIPSLQVPGQ
ANIVQIRGPQHAQLQRTGSVQIRATTRPPNSVPTANKLTAVKVGQTQIKA
ITPSLHPPSLAAISGGPPPTPTLSVLSTLNSASTTTLPIPSLPTVHLPPE
ALRAREQMQNSLNHNSNHFDAKLVEIKAPSLHPPHMERINASLTPIGAKT
MARPPPAINKAIGKKKRDAMEMDAKLNTSSGGAASAANSFFQQSSMSSMY
GDDDINDVAAMGGVNLAEESQRILGCTENIGTQIRSCKDEVFLNLPSLQA
RIRAITSEAGLDEPSQDVAVLISHACQERLKNIVEKLAVIAEHRIDVIKL
DPRYEPAKDVRGQIKFLEELDKAEQKRHEELEREMLLRAAKSRSRVEDPE
QAKMKARAKEMQRAEMEELRQRDANLTALQAIGPRKKLKLDGETVSSGAG
SSGGGVLSSSGSAPTTLRPRIKRVNLRDMLFYMEQEREFCRSSMLFKTYL
K*
BS19693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taf4-PD | 851 | CG5444-PD | 1..851 | 1..851 | 4287 | 100 | Plus |
| Taf4-PC | 851 | CG5444-PC | 1..851 | 1..851 | 4287 | 100 | Plus |
| Taf4-PG | 962 | CG5444-PG | 1..962 | 1..851 | 3975 | 85.6 | Plus |
| Taf4-PI | 921 | CG5444-PI | 1..921 | 1..851 | 3925 | 87.6 | Plus |
| Taf4-PF | 921 | CG5444-PF | 1..921 | 1..851 | 3925 | 87.6 | Plus |
