BS19701.complete Sequence
2264 bp assembled on 2011-02-17
GenBank Submission: KX800650
> BS19701.complete
GAAGTTATCAGTCGACATGGGCAGTCTGCCGAATCTTCACGAGCTGGAGG
AGGCGGAGCGCAAGCGGGAGAAGCGACGGGAGTACGAACTTCTGCTGGAG
CAGCGGGCTCGGGACACCAGTCGCGAGCGGGAGCGTCTCTCCGCGTTTGC
TCAGCAGCGCAAGCAATCGTCGTATAATGCTTACATAATGGCTGGTCTGG
GGATTGGTGGCGGATCCTTGAGCCTCAATGCCACCTCAGGAACTGCAACA
GGCAACGGAGAGCTGCTCGGTGGCAATGGGACAACTGGCGGAAAGGGTCC
GAACCAGGCAGTGGGCCCAGCTTCTGGATTGGCCACCAGCTCGGGAGCTC
CGGTGGCCACCAGTGGCTTTGCGATGCTGGGACTGGGCAAGAAGTATGCC
CCACACTCACACCACCATCAGCATCAGCACCAGCATCAGCACCAGCACCA
GCACCATCAGCACCGCCATTCGCTGACCACCAGGCACAGAGTGCTTCGAA
CCCGCAGTTCAGGAGGAGCCCAGAACGTCTGGGAAGAGCAGATGATGGAG
CACTTCACCACATACTCGCCGTCACCCATTTCGACGAGGTCGCATCGCAT
AAATCCGGTGTCCTCGTACCAGGTGCAGGCTGCTCTGGCGGCCTCTCGTC
GTCGGGAGTCCATAAACAGCTCCATTGGAGCCACCTCCATACGGCGATTG
ATAACGCTGAACAACAGGAATTGCCGGCACAAGGTGCCAGCCCATGTGCG
CCAAAAAGTGTGGCGCCAGTTTAGCTGTTTAAGCTTGGCCCACGGACTGA
TGAACTGCGTTCTGCTGCCGGTGATGGCGCTCCAGGGCTCCAATGCGGTG
TGGCACCATCGGGAGGAATGGTTGCCCCTCGGTCCGGAGGTTGGATCCCT
TCTGCTGAGTGCTCTCTTCCTGGTCGCCGCTGGTATGAGCCTGCCCAGCA
TTCGACTGATGAAACGATATGGTTATGGGCCACTAATTGTGGCAAACTAT
ATGACAGTGCTCCTATTTCTTCTGTCGCACCTGTACGCCTCCATTTACAC
CCTTCTACCCGCCTATTTGCTGCTTGGCATGACCTTAAGCGGATCCGCTG
GCTCCAAAGCCGCGTTGATTGTCCACTTTGGAGGGAAGTTGAGCTGCTCC
TGCGATTCCCAGCAGTCGCAGGCGGCGGTCGATGTCTTGCACGAGGAGCA
CAAGATGTTTTGCAATCGGGATCAGAAGGTGAGGCGTCTGGCCAGGTGGT
TCAGGGTTTCCCAGGACCTGGGTCTCATAGGAGGAGCCCTTCTGGCATCC
ATTTTGCTGGCCTGCAGCGATGGAAACTTTACGGGCGATTGCTCCGGATT
GGTTTACTATGGAAACGAGAGCTGGCCACCACAACTGAGGGATTTCTACA
ATAGGAACGAGCACGGCGACAGGATCTGTGGGGCAGACATGTGTCCACTC
AGAGTGCAGTCAATCCTGGAGGCGGGATGGGCCAATGGGAGCTCCATACC
CAGTTCCATCTATGCTGGCTTCATCGAAAGTGAGCCTCGAGTGGCCGGGC
AATCCTTGCTCTGGCTGTACGTTCTGTTCTCCATGGTATCATTGACCCTT
TCGCTGCTGATAGTGGTGGACAAGGTGCAGGCCATAGGCTCATCGCGACC
GGAGCGTTCGAGAGATGTAAGCATCACGGACACCCTGCTGTTTGCCGGAC
CCCTGGCCTATTTTGTGGGCACGGAACAGGCGTATATGATGGGTGACTTC
TTGAGGGCCTTCGTCACCTGTTCGCTGGGCATCGGAATGATTGCCGGCGC
GTTGATTGGCATGGGTCTGATGCAGCTCATCGTCTCCTGTACCTTGAGCA
TGCTGCTAAGGCACGTCAAGAGGATCGTCGTGATTTTGGCTGGTTTCTTC
TTCCACTCCTGTCTACTGCTGGCGCTGTCCAGTTGGAAGCCCTCGAGTGA
CGACAGCGCCCTGTTCTACGTGATTGCCGCCTCGTGGGGTGCCTGTAATG
GGATGTGGGAGACGCTCCTGCTCTCGCTGGTCACCCTCAACCATTCCAGT
CATGTAACGGAGGTCCAGGCGCCTCTTCTTGCCCTTCGCTTCCTGGGACT
GGGATTGACCTTTGCCGGTCACGGCTTCCTCTGCGAATCGATGAAGATCA
TTGCATTGGTGGTGCTCCTCGTCATCAGTGTGCCGCCATATGCCACTCTG
GAAATCCGATTGGAGGCGCAACGCAAGGCGACGCTCGTCAGCTTATGAAA
GCTTTCTAGACCAT
BS19701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3078-RA | 2232 | CG3078-PA | 1..2232 | 17..2248 | 11160 | 100 | Plus |
| CG3078-RB | 2235 | CG3078-PB | 1..2235 | 17..2248 | 11095 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3078-RA | 3979 | CG3078-RA | 411..2642 | 17..2248 | 11160 | 100 | Plus |
| CG3078-RB | 3982 | CG3078-RB | 411..2645 | 17..2248 | 11095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2256160..2257497 | 1886..549 | 6690 | 100 | Minus |
| X | 23542271 | X | 2257880..2258268 | 550..162 | 1945 | 100 | Minus |
| X | 23542271 | X | 2255740..2256101 | 2248..1887 | 1810 | 100 | Minus |
| X | 23542271 | X | 2258328..2258474 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:38:14 has no hits.
BS19701.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:24 Download gff for
BS19701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3078-RA | 411..2641 | 17..2247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:56 Download gff for
BS19701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3078-RA | 411..2641 | 17..2247 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:43 Download gff for
BS19701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3078-RA | 411..2641 | 17..2247 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:43 Download gff for
BS19701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2255741..2256101 | 1887..2247 | 100 | <- | Minus |
| X | 2256160..2257495 | 551..1886 | 100 | <- | Minus |
| X | 2257880..2258266 | 164..550 | 100 | <- | Minus |
| X | 2258328..2258474 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:56 Download gff for
BS19701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2149774..2150134 | 1887..2247 | 100 | <- | Minus |
| arm_X | 2150193..2151528 | 551..1886 | 100 | <- | Minus |
| arm_X | 2151913..2152299 | 164..550 | 100 | <- | Minus |
| arm_X | 2152361..2152507 | 17..163 | 100 | | Minus |
BS19701.pep Sequence
Translation from 16 to 2247
> BS19701.pep
MGSLPNLHELEEAERKREKRREYELLLEQRARDTSRERERLSAFAQQRKQ
SSYNAYIMAGLGIGGGSLSLNATSGTATGNGELLGGNGTTGGKGPNQAVG
PASGLATSSGAPVATSGFAMLGLGKKYAPHSHHHQHQHQHQHQHQHHQHR
HSLTTRHRVLRTRSSGGAQNVWEEQMMEHFTTYSPSPISTRSHRINPVSS
YQVQAALAASRRRESINSSIGATSIRRLITLNNRNCRHKVPAHVRQKVWR
QFSCLSLAHGLMNCVLLPVMALQGSNAVWHHREEWLPLGPEVGSLLLSAL
FLVAAGMSLPSIRLMKRYGYGPLIVANYMTVLLFLLSHLYASIYTLLPAY
LLLGMTLSGSAGSKAALIVHFGGKLSCSCDSQQSQAAVDVLHEEHKMFCN
RDQKVRRLARWFRVSQDLGLIGGALLASILLACSDGNFTGDCSGLVYYGN
ESWPPQLRDFYNRNEHGDRICGADMCPLRVQSILEAGWANGSSIPSSIYA
GFIESEPRVAGQSLLWLYVLFSMVSLTLSLLIVVDKVQAIGSSRPERSRD
VSITDTLLFAGPLAYFVGTEQAYMMGDFLRAFVTCSLGIGMIAGALIGMG
LMQLIVSCTLSMLLRHVKRIVVILAGFFFHSCLLLALSSWKPSSDDSALF
YVIAASWGACNGMWETLLLSLVTLNHSSHVTEVQAPLLALRFLGLGLTFA
GHGFLCESMKIIALVVLLVISVPPYATLEIRLEAQRKATLVSL*
BS19701.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3078-PA | 743 | CG3078-PA | 1..743 | 1..743 | 3833 | 100 | Plus |
| CG3078-PB | 744 | CG3078-PB | 1..744 | 1..743 | 3821 | 99.9 | Plus |
| CG4928-PC | 495 | CG4928-PC | 76..485 | 292..742 | 254 | 21.2 | Plus |
| CG4928-PB | 538 | CG4928-PB | 76..476 | 292..730 | 252 | 20.9 | Plus |
| CG4928-PA | 538 | CG4928-PA | 76..476 | 292..730 | 252 | 20.9 | Plus |
