BS19703.complete Sequence
1982 bp assembled on 2011-01-28
GenBank Submission: KX806530
> BS19703.complete
GAAGTTATCAGTCGACATGCTGAACGCTGCAGCGCTGCTTTTGGCGCTGC
TCTGCGCCGCGAACGCAGCCGCCGCCGCCGATTTGGCGGACAAATTGCGC
GATGATTCGGAACTCTCTCAGTTCTACAGCCTGCTGGAGAGCAATCAAAT
TGCCAACTCAACGCTTTCGCTGCGCAGCTGCACGATCTTTGTGCCCACCA
ATGAAGCCTTCCAGCGCTACAAGAGCAAAACCGCCCATGTGCTCTATCAC
ATTACCACTGAGGCGTACACCCAGAAACGACTGCCGAATACCGTGTCATC
GGACATGGCCGGCAATCCACCGCTGTACATCACAAAGAACTCGAATGGCG
ACATCTTTGTGAACAATGCCCGGATCATACCCTCGCTCAGTGTGGAGACA
AACAGCGATGGCAAGCGGCAGATCATGCACATCATCGACGAGGTACTGGA
GCCGCTCACCGTCAAGGCTGGCCATTCGGATACCCCCAACAATCCGAATG
CTCTCAAGTTCCTGAAGAACGCCGAGGAGTTCAACGTGGACAACATCGGT
GTGCGCACGTACCGCAGCCAGGTGACGATGGCCAAGAAAGAGTCGGTCTA
TGATGCCGCCGGACAGCACACGTTCCTGGTTCCCGTCGATGAAGGCTTCA
AGCTCTCGGCTCGCAGCAGCCTCGTGGACGGCAAGGTCATCGATGGCCAT
GTGATACCAAACACTGTCATCTTCACTGCCGCTGCCCAGCATGACGATCC
CAAGGCTTCCGCCGCTTTTGAGGACTTACTCAAGGTCACCGTCAGTTTCT
TCAAGCAGAAGAACGGCAAAATGTACGTCAAGTCAAACACCATTGTGGGT
GATGCCAAACACCGCGTGGGCGTGGTTCTGGCCGAAATCGTGAAGGCGAA
CATCCCAGTGAGCAACGGAGTAGTCCATCTGATCCACCGCCCGCTGATGA
TCATCGATACGACGGTCACCCAATTCCTGCAGGAGAATGCTGAGAACGGA
GCTCTGCGCAAGTTCTACGAAGTTATAATGGACAATGGTGGAGCAGTTCT
GGACGACATCAATAGCCTGACAGAAGTGACCATTTTGGCTCCCAGCAATG
AGGCTTGGAACTCCTCGAACATCAACAATGTTTTGCGAGATCGGAATAAG
ATGAGGCAGATCCTGAACATGCATATCATCAAGGACCGCTTAAATGTGGA
CAAGATCAGGCAGAAAAATGCAAATTTGATTGCCCAGGTGCCCACTGTCA
ACAACAACACTTTCCTGTACTTCAACGTTCGCGGTGAGGGATCGGATACC
GTGATAACAGTTGAGGGAGGCGGCGTGAATGCCACCGTTATCCAGGCTGA
TGTGGCCCAGACTAATGGTTATGTTCACATCATCGACCATGTGCTGGGCG
TGCCTTACACTACAGTTCTTGGCAAACTTGAATCCGATCCCATGATGAGT
GACACCTATAAGATGGGAAAATTCTCGCACTTTAATGACCAGCTGAACAA
CACACAACGCCGCTTCACCTACTTTGTGCCCAGGGACAAGGGCTGGCAGA
AGACCGAGCTGGATTACCCATCGGCTCACAAGAAGCTTTTTATGGCCGAC
TTTTCCTATCATTCCAAGTCCATTCTGGAGCGTCATTTGGCTATTTCGGA
TAAGGAGTACACCATGAAGGATCTGGTTAAGTTTTCGCAAGAATCGGGCA
GCGTAATCCTACCCACGTTCCGCGACTCTTTGAGTATCCGCGTGGAGGAG
GAAGCTGGACGCTATGTGATCATTTGGAACTACAAGAAGATCAACGTATA
CCGGCCCGATGTTGAGTGCACCAACGGAATTATCCACGTCATCGACTACC
CACTCCTGGAGGAAAAGGATGTGGTCGTGGCCGGAGGTAGCTATTTGCCA
GAATCAAGCATTTGCATCATCTTGGCCAACCTCATAATGATAACAGTAGC
AAAGTTCTTGAACTAAAAGCTTTCTAGACCAT
BS19703.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas1-RA | 1950 | CG6588-PA | 1..1950 | 17..1966 | 9750 | 100 | Plus |
| Fas1-RB | 1959 | CG6588-PB | 1..1959 | 17..1966 | 9625 | 99.5 | Plus |
| Fas1-RC | 1968 | CG6588-PC | 1..1968 | 17..1966 | 9535 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas1-RA | 3002 | CG6588-RA | 196..2146 | 17..1967 | 9755 | 100 | Plus |
| Fas1-RB | 3011 | CG6588-RB | 196..2155 | 17..1967 | 9630 | 99.5 | Plus |
| Fas1-RC | 3073 | CG6588-RC | 249..2217 | 17..1967 | 9540 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16632061..16632294 | 419..652 | 1170 | 100 | Plus |
| 3R | 32079331 | 3R | 16635921..16636142 | 1228..1449 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 16636986..16637192 | 1761..1967 | 1035 | 100 | Plus |
| 3R | 32079331 | 3R | 16632360..16632530 | 651..821 | 855 | 100 | Plus |
| 3R | 32079331 | 3R | 16631823..16631993 | 255..425 | 840 | 99.4 | Plus |
| 3R | 32079331 | 3R | 16636200..16636364 | 1448..1612 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 16632608..16632769 | 822..983 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 16635544..16635700 | 981..1137 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 16636429..16636577 | 1613..1761 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 16631606..16631741 | 119..254 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 16626112..16626216 | 17..121 | 525 | 100 | Plus |
| 3R | 32079331 | 3R | 16635766..16635857 | 1137..1228 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:13:36 has no hits.
BS19703.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:42 Download gff for
BS19703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas1-RA | 261..2208 | 17..1964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:26 Download gff for
BS19703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas1-RA | 196..2143 | 17..1964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:02 Download gff for
BS19703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas1-RA | 196..2143 | 17..1964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:02 Download gff for
BS19703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16636202..16636364 | 1450..1612 | 100 | -> | Plus |
| 3R | 16636429..16636576 | 1613..1760 | 100 | -> | Plus |
| 3R | 16636986..16637189 | 1761..1964 | 100 | | Plus |
| 3R | 16632064..16632294 | 422..652 | 100 | -> | Plus |
| 3R | 16632362..16632530 | 653..821 | 100 | -> | Plus |
| 3R | 16632608..16632768 | 822..982 | 100 | -> | Plus |
| 3R | 16635546..16635700 | 983..1137 | 100 | -> | Plus |
| 3R | 16635767..16635857 | 1138..1228 | 100 | -> | Plus |
| 3R | 16635922..16636142 | 1229..1449 | 100 | -> | Plus |
| 3R | 16631609..16631741 | 122..254 | 100 | -> | Plus |
| 3R | 16631823..16631989 | 255..421 | 100 | -> | Plus |
| 3R | 16626112..16626216 | 17..121 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:26 Download gff for
BS19703.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12457545..12457711 | 255..421 | 100 | -> | Plus |
| arm_3R | 12457331..12457463 | 122..254 | 100 | -> | Plus |
| arm_3R | 12451834..12451938 | 17..121 | 100 | -> | Plus |
| arm_3R | 12457786..12458016 | 422..652 | 100 | -> | Plus |
| arm_3R | 12458084..12458252 | 653..821 | 100 | -> | Plus |
| arm_3R | 12458330..12458490 | 822..982 | 100 | -> | Plus |
| arm_3R | 12461268..12461422 | 983..1137 | 100 | -> | Plus |
| arm_3R | 12461489..12461579 | 1138..1228 | 100 | -> | Plus |
| arm_3R | 12461644..12461864 | 1229..1449 | 100 | -> | Plus |
| arm_3R | 12461924..12462086 | 1450..1612 | 100 | -> | Plus |
| arm_3R | 12462151..12462298 | 1613..1760 | 100 | -> | Plus |
| arm_3R | 12462708..12462911 | 1761..1964 | 100 | | Plus |
BS19703.pep Sequence
Translation from 16 to 1965
> BS19703.pep
MLNAAALLLALLCAANAAAAADLADKLRDDSELSQFYSLLESNQIANSTL
SLRSCTIFVPTNEAFQRYKSKTAHVLYHITTEAYTQKRLPNTVSSDMAGN
PPLYITKNSNGDIFVNNARIIPSLSVETNSDGKRQIMHIIDEVLEPLTVK
AGHSDTPNNPNALKFLKNAEEFNVDNIGVRTYRSQVTMAKKESVYDAAGQ
HTFLVPVDEGFKLSARSSLVDGKVIDGHVIPNTVIFTAAAQHDDPKASAA
FEDLLKVTVSFFKQKNGKMYVKSNTIVGDAKHRVGVVLAEIVKANIPVSN
GVVHLIHRPLMIIDTTVTQFLQENAENGALRKFYEVIMDNGGAVLDDINS
LTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIKDRLNVDKIRQK
NANLIAQVPTVNNNTFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTN
GYVHIIDHVLGVPYTTVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRF
TYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILERHLAISDKEYTM
KDLVKFSQESGSVILPTFRDSLSIRVEEEAGRYVIIWNYKKINVYRPDVE
CTNGIIHVIDYPLLEEKDVVVAGGSYLPESSICIILANLIMITVAKFLN*
BS19703.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas1-PA | 649 | CG6588-PA | 1..649 | 1..649 | 3312 | 100 | Plus |
| Fas1-PB | 652 | CG6588-PB | 1..652 | 1..649 | 3298 | 99.5 | Plus |
| Fas1-PC | 655 | CG6588-PC | 1..655 | 1..649 | 3295 | 99.1 | Plus |
| Fas1-PD | 662 | CG6588-PD | 1..662 | 1..649 | 3288 | 98 | Plus |
| Fas1-PG | 661 | CG6588-PG | 1..661 | 1..649 | 3284 | 98 | Plus |
