BS19708.complete Sequence
464 bp assembled on 2011-01-04
GenBank Submission: KX801328
> BS19708.complete
GAAGTTATCAGTCGACATGTCGTTTAATATCATGCAAAAGCTGACCATGC
AGTGCCTGAAGGCAGACCAGCCGCTGATGACCACCGTGCGCAATGCCAGC
AAGAAAACCGGCGGAAGTACGAGGAATAAGAAGGGCCATGCGAGGCCCAA
ACATCGCGGATGGCGCGTCCAGGATGGGCACCACGTCTCCGAGGGCACAA
TACTGGCCACCCAGCTCACAACGCGCTTTCATCCGGGCCTGAATGTGGGC
TTTGGCCGCAATGGAACCCTTTTCGCCATGGAGCACGGCAAGGTTTATGT
GACCTGCGAGGCCATCGATCCCAACTGGGACCACACCTGGATTCAGCGGA
ACTACGCCGGTCGCCAGGGCCAGAACATCTACAAGAAGTTCTTCAATGTT
GTGCCCGAAAATCAGCATCAGCGATTTCGTCTAGTGGAGGAAATCTAGAA
GCTTTCTAGACCAT
BS19708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL27-RC | 417 | CG33002-PC | 1..417 | 32..448 | 2085 | 100 | Plus |
mRpL27-RB | 417 | CG33002-PB | 1..417 | 32..448 | 2085 | 100 | Plus |
mRpL27-RA | 417 | CG33002-PA | 1..417 | 32..448 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL27-RC | 547 | CG33002-RC | 92..524 | 17..449 | 2165 | 100 | Plus |
mRpL27-RB | 896 | CG33002-RB | 56..488 | 17..449 | 2165 | 100 | Plus |
mRpL27-RA | 511 | CG33002-RA | 56..488 | 17..449 | 2165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4459003..4459207 | 449..245 | 1025 | 100 | Minus |
2L | 23513712 | 2L | 4459263..4459429 | 247..81 | 835 | 100 | Minus |
2L | 23513712 | 2L | 4459484..4459547 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:45:17 has no hits.
BS19708.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:30 Download gff for
BS19708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL27-RA | 56..487 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:56 Download gff for
BS19708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL27-RA | 56..487 | 17..448 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:33 Download gff for
BS19708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL27-RA | 56..487 | 17..448 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:33 Download gff for
BS19708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4459004..4459207 | 245..448 | 100 | <- | Minus |
2L | 4459266..4459429 | 81..244 | 100 | <- | Minus |
2L | 4459484..4459547 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:56 Download gff for
BS19708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4459266..4459429 | 81..244 | 100 | <- | Minus |
arm_2L | 4459484..4459547 | 17..80 | 100 | | Minus |
arm_2L | 4459004..4459207 | 245..448 | 100 | <- | Minus |
BS19708.pep Sequence
Translation from 16 to 447
> BS19708.pep
MSFNIMQKLTMQCLKADQPLMTTVRNASKKTGGSTRNKKGHARPKHRGWR
VQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKVYVTCEAI
DPNWDHTWIQRNYAGRQGQNIYKKFFNVVPENQHQRFRLVEEI*
BS19708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL27-PC | 138 | CG33002-PC | 1..138 | 6..143 | 756 | 100 | Plus |
mRpL27-PB | 138 | CG33002-PB | 1..138 | 6..143 | 756 | 100 | Plus |
mRpL27-PA | 138 | CG33002-PA | 1..138 | 6..143 | 756 | 100 | Plus |