Clone BS19708 Report

Search the DGRC for BS19708

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL27-RA
Protein status:BS19708.pep: gold
Sequenced Size:464

Clone Sequence Records

BS19708.complete Sequence

464 bp assembled on 2011-01-04

GenBank Submission: KX801328

> BS19708.complete
GAAGTTATCAGTCGACATGTCGTTTAATATCATGCAAAAGCTGACCATGC
AGTGCCTGAAGGCAGACCAGCCGCTGATGACCACCGTGCGCAATGCCAGC
AAGAAAACCGGCGGAAGTACGAGGAATAAGAAGGGCCATGCGAGGCCCAA
ACATCGCGGATGGCGCGTCCAGGATGGGCACCACGTCTCCGAGGGCACAA
TACTGGCCACCCAGCTCACAACGCGCTTTCATCCGGGCCTGAATGTGGGC
TTTGGCCGCAATGGAACCCTTTTCGCCATGGAGCACGGCAAGGTTTATGT
GACCTGCGAGGCCATCGATCCCAACTGGGACCACACCTGGATTCAGCGGA
ACTACGCCGGTCGCCAGGGCCAGAACATCTACAAGAAGTTCTTCAATGTT
GTGCCCGAAAATCAGCATCAGCGATTTCGTCTAGTGGAGGAAATCTAGAA
GCTTTCTAGACCAT

BS19708.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL27-RC 417 CG33002-PC 1..417 32..448 2085 100 Plus
mRpL27-RB 417 CG33002-PB 1..417 32..448 2085 100 Plus
mRpL27-RA 417 CG33002-PA 1..417 32..448 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL27-RC 547 CG33002-RC 92..524 17..449 2165 100 Plus
mRpL27-RB 896 CG33002-RB 56..488 17..449 2165 100 Plus
mRpL27-RA 511 CG33002-RA 56..488 17..449 2165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4459003..4459207 449..245 1025 100 Minus
2L 23513712 2L 4459263..4459429 247..81 835 100 Minus
2L 23513712 2L 4459484..4459547 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:45:17 has no hits.

BS19708.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:30 Download gff for BS19708.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL27-RA 56..487 17..448 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:56 Download gff for BS19708.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL27-RA 56..487 17..448 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:33 Download gff for BS19708.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL27-RA 56..487 17..448 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:33 Download gff for BS19708.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4459004..4459207 245..448 100 <- Minus
2L 4459266..4459429 81..244 100 <- Minus
2L 4459484..4459547 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:56 Download gff for BS19708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4459266..4459429 81..244 100 <- Minus
arm_2L 4459484..4459547 17..80 100   Minus
arm_2L 4459004..4459207 245..448 100 <- Minus

BS19708.pep Sequence

Translation from 16 to 447

> BS19708.pep
MSFNIMQKLTMQCLKADQPLMTTVRNASKKTGGSTRNKKGHARPKHRGWR
VQDGHHVSEGTILATQLTTRFHPGLNVGFGRNGTLFAMEHGKVYVTCEAI
DPNWDHTWIQRNYAGRQGQNIYKKFFNVVPENQHQRFRLVEEI*

BS19708.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL27-PC 138 CG33002-PC 1..138 6..143 756 100 Plus
mRpL27-PB 138 CG33002-PB 1..138 6..143 756 100 Plus
mRpL27-PA 138 CG33002-PA 1..138 6..143 756 100 Plus