Clone BS19709 Report

Search the DGRC for BS19709

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG32945-RA
Protein status:BS19709.pep: full length peptide match
Sequenced Size:533

Clone Sequence Records

BS19709.complete Sequence

533 bp assembled on 2011-01-04

GenBank Submission: KX804266

> BS19709.complete
GAAGTTATCAGTCGACATGGGTGCTGGGAACAGCAAGCCGCAAACGGTGC
AGATTGAAAATCCAACGGCATTTGAGATTACTCGGGATGTGGTAGATAGA
ATAAAGCAGGCCACCGTCATAAGTACTGAACTCGGATCTACCACCTGTGA
AGCGTGTAAGCAAAAACCAATAAAAGAATCGTGTTCCGATATACGTACTC
CGATGGAACATAAGCAGCATAATGTGAGTGCCTTACATCCAGTTCCGGTG
GCCAAGTCCTGGAAGAAGCGTTCTTTGGAAGTCGAGGAAAAAGAGTTCGG
AAAATCCTTAAAATTGGTTCAAGAACTATTCGGTACGCCTGTAAAATGGG
CCAAGGATTGCGAGGGCGAGATCGAAAAATTCGAGGAAGAGCTGGTTCAC
TGCTATCAACGGTTTCCAAACGAACCCCTTCAGTGCTCTAATTTGGCCAG
ACAGTATCACCGATTCGTATTCGCCAAACAGTATGCCGAATTATCGAAAA
CCAATACATGTACTTAAAAGCTTTCTAGACCAT

BS19709.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32945-RA 501 CG32945-PA 1..501 17..517 2505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32945-RA 706 CG32945-RA 49..553 14..518 2525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4578092..4578596 518..14 2525 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:45:27 has no hits.

BS19709.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:31 Download gff for BS19709.complete
Subject Subject Range Query Range Percent Splice Strand
CG32945-RA 52..550 17..515 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:59 Download gff for BS19709.complete
Subject Subject Range Query Range Percent Splice Strand
CG32945-RA 52..550 17..515 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:37 Download gff for BS19709.complete
Subject Subject Range Query Range Percent Splice Strand
CG32945-RA 52..550 17..515 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:37 Download gff for BS19709.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4578095..4578593 17..515 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:59 Download gff for BS19709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 403817..404315 17..515 100   Minus

BS19709.pep Sequence

Translation from 16 to 516

> BS19709.pep
MGAGNSKPQTVQIENPTAFEITRDVVDRIKQATVISTELGSTTCEACKQK
PIKESCSDIRTPMEHKQHNVSALHPVPVAKSWKKRSLEVEEKEFGKSLKL
VQELFGTPVKWAKDCEGEIEKFEEELVHCYQRFPNEPLQCSNLARQYHRF
VFAKQYAELSKTNTCT*

BS19709.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32945-PA 166 CG32945-PA 1..166 1..166 882 100 Plus