Clone BS19711 Report

Search the DGRC for BS19711

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:11
Vector:pDNR-Dual
Associated Gene/Transcripttomboy20-RA
Protein status:BS19711.pep: gold
Sequenced Size:476

Clone Sequence Records

BS19711.complete Sequence

476 bp assembled on 2011-01-04

GenBank Submission: KX804216

> BS19711.complete
GAAGTTATCAGTCGACATGATTGGAGTCTCGGGAACTTTCAAGGTGCTGG
CGGCCATATCGGGTATACTCTTCATGGGCTATTGCGTATATTTCGACAAA
CAGCGTCGGAGTGATCCAGATTTCAAGAGGAAGTTGCACGAGCGCAGGAT
TCAACGCTCATTGGCATCCGTGAAGTCCACGGCATCGGTTTCCATGAGCG
AGCGGGACGTCGAAGTGTACTTCATGACCCAGATACACAAGGGCGAGACC
CTGATCACAAACGGCGATGTTGAGGCCGGCGTGGAGCATCTAATCAACGC
GATACTCGTCTGCGGCCAGCCGTCAAAACTGTTGCAGTTGCTCCAGAGCA
CCTTGCCCATGGATATTTTCACCACAATGCTGATCAAGATGCACGCCTAC
GAGGCCTCGCAGCGCTGTTTGCCTGTTTTAGTGGATGATGAGGCTACCAG
TAGCCTTTGAAAGCTTTCTAGACCAT

BS19711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
tomboy20-RA 444 CG14690-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
tomboy20-RA 681 CG14690-RA 106..551 17..462 2230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10735407..10735852 462..17 2230 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:44:54 has no hits.

BS19711.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:29 Download gff for BS19711.complete
Subject Subject Range Query Range Percent Splice Strand
tomboy20-RA 106..548 17..459 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:52 Download gff for BS19711.complete
Subject Subject Range Query Range Percent Splice Strand
tomboy20-RA 106..548 17..459 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:25 Download gff for BS19711.complete
Subject Subject Range Query Range Percent Splice Strand
tomboy20-RA 106..548 17..459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:25 Download gff for BS19711.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10735410..10735852 17..459 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:52 Download gff for BS19711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6561132..6561574 17..459 100   Minus

BS19711.pep Sequence

Translation from 16 to 459

> BS19711.pep
MIGVSGTFKVLAAISGILFMGYCVYFDKQRRSDPDFKRKLHERRIQRSLA
SVKSTASVSMSERDVEVYFMTQIHKGETLITNGDVEAGVEHLINAILVCG
QPSKLLQLLQSTLPMDIFTTMLIKMHAYEASQRCLPVLVDDEATSSL*

BS19711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
tomboy20-PA 147 CG14690-PA 1..147 1..147 738 100 Plus
Tom20-PB 171 CG7654-PB 11..130 10..128 328 47.5 Plus
Tom20-PA 171 CG7654-PA 11..130 10..128 328 47.5 Plus