Clone BS19712 Report

Search the DGRC for BS19712

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS18A-RA
Protein status:BS19712.pep: full length peptide match
Sequenced Size:500

Clone Sequence Records

BS19712.complete Sequence

500 bp assembled on 2011-01-04

GenBank Submission: KX800426

> BS19712.complete
GAAGTTATCAGTCGACATGTCCTTTGTGTTGCAATTGGCCACCAGGACAG
TACGAAGTACCATTGCTCAGGTGCGTGGCGTAGCCACCACAATGCCAAGG
CAAATTAAAGAGATTCATGAGAAGCAGGAGAACAGTGTAAAGATCTTCGA
GGGCGTTAATGTGGAATCGCCGCGTGCTCACCTGATGCTTAAATCCGCCT
GCCAGACCAAGTTTTGCCCGGAATGCACCTTGGGCCTGGACATCAAGCAC
ACGGATGTGCTAATCCTGTCGCAGTATGTCCGTTCCGACGGCTGTATGCT
GCCCAGAAGGATCACCGGACTTTGCCACCGGCAACAAAAGAAGATGGGCA
CTCTGGTAACCATGGCTCAGAAGGCGGGACTGATGCCAAATCTGGCGCCC
GAGTGGAGTAAAAGAGATCCCAAGAAGCGCTTCGGCTGGCGCAAGTTCAA
CAAGTACTTCCTGGAGTCCACAATTAAATACTAGAAGCTTTCTAGACCAT

BS19712.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18A-RA 468 CG31450-PA 1..468 17..484 2325 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18A-RA 581 CG31450-RA 84..553 15..484 2335 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8561945..8562315 484..114 1855 100 Minus
3R 32079331 3R 8562412..8562510 113..15 480 99 Minus
Blast to na_te.dros performed on 2014-11-26 15:45:08 has no hits.

BS19712.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:29 Download gff for BS19712.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18A-RA 76..543 17..484 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:54 Download gff for BS19712.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18A-RA 86..553 17..484 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:30 Download gff for BS19712.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18A-RA 86..553 17..484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:30 Download gff for BS19712.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8561945..8562315 114..484 100 <- Minus
3R 8562412..8562508 17..113 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:54 Download gff for BS19712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4387667..4388037 114..484 100 <- Minus
arm_3R 4388134..4388230 17..113 98   Minus

BS19712.pep Sequence

Translation from 16 to 483

> BS19712.pep
MSFVLQLATRTVRSTIAQVRGVATTMPRQIKEIHEKQENSVKIFEGVNVE
SPRAHLMLKSACQTKFCPECTLGLDIKHTDVLILSQYVRSDGCMLPRRIT
GLCHRQQKKMGTLVTMAQKAGLMPNLAPEWSKRDPKKRFGWRKFNKYFLE
STIKY*

BS19712.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18A-PA 155 CG31450-PA 1..155 1..155 812 100 Plus