Clone BS19715 Report

Search the DGRC for BS19715

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)SH0834-RA
Protein status:BS19715.pep: full length peptide match
Sequenced Size:647

Clone Sequence Records

BS19715.complete Sequence

647 bp assembled on 2011-01-04

GenBank Submission: KX804591

> BS19715.complete
GAAGTTATCAGTCGACATGGATAGTAATGATTCAGGAACAGCAGATGCGA
ATTCTGCACGGCAGTCGCTTGCGTTGCGGCGGGAATTGCGCAGAAAGAAA
ATATTGGAAGCGTCCAAGGCACGACTGGACAAATTGAATAGCAGATCGAC
GTCGGCGTTTCAGAATGAAAACCTCGATGGTGAACCCTCAAATACGCAAT
ATTCCGATCCGGAGGTGGAGCCGGATATTCCAATAAGGCGTTCATTTCTG
CCAGAACAACCTGCGCCCCAAAGAACCACGTCACGAAATGCATTTCTTAA
GAGCAGAGTTCACATTATTTTGGCGGCTTGCTTTGGATTTCTTTTGGCTC
TTTACACGAACACCAGTGTTTTCATTCCCGTTCTGCTTTTTGTGATTGCA
GAGCTTGCATTTCTGCAGAATTACAAAGAAGACCATTTACCGGCCAGCAT
GGGACCCTTGTTACTTATGTTCATCAATCCGAATATTACCAGCAAAATTA
AGCAGTTTAGCAGTATATTTTTTATTCTTCAGTCATTGTTGGGTGATCTT
GCGATAACCGTTTGTGTTGTTTGTTCAGGAAGCATGCTCTTACTAAATTT
TAGACCCGAATATGCTACAATTGTTAAATAAAAGCTTTCTAGACCAT

BS19715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)SH0834-RA 615 CG5385-PA 1..615 17..631 3045 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)SH0834-RA 936 CG5385-RA 42..658 17..633 3055 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10311328..10311785 633..176 2275 99.8 Minus
2L 23513712 2L 10311899..10312058 176..17 785 99.4 Minus
Blast to na_te.dros performed on 2014-11-26 15:45:46 has no hits.

BS19715.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:32 Download gff for BS19715.complete
Subject Subject Range Query Range Percent Splice Strand
CG5385-RA 12..624 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:04 Download gff for BS19715.complete
Subject Subject Range Query Range Percent Splice Strand
CG5385-RA 42..654 17..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:43 Download gff for BS19715.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)SH0834-RA 42..654 17..629 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:43 Download gff for BS19715.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10311332..10311784 177..629 99 <- Minus
2L 10311899..10312058 17..176 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:04 Download gff for BS19715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10311332..10311784 177..629 99 <- Minus
arm_2L 10311899..10312058 17..176 99   Minus

BS19715.pep Sequence

Translation from 16 to 630

> BS19715.pep
MDSNDSGTADANSARQSLALRRELRRKKILEASKARLDKLNSRSTSAFQN
ENLDGEPSNTQYSDPEVEPDIPIRRSFLPEQPAPQRTTSRNAFLKSRVHI
ILAACFGFLLALYTNTSVFIPVLLFVIAELAFLQNYKEDHLPASMGPLLL
MFINPNITSKIKQFSSIFFILQSLLGDLAITVCVVCSGSMLLLNFRPEYA
TIVK*

BS19715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)SH0834-PA 204 CG5385-PA 1..204 1..204 1021 100 Plus