Clone BS19728 Report

Search the DGRC for BS19728

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG18731-RA
Protein status:BS19728.pep: full length peptide match
Sequenced Size:392

Clone Sequence Records

BS19728.complete Sequence

392 bp assembled on 2011-01-04

GenBank Submission: KX805759

> BS19728.complete
GAAGTTATCAGTCGACATGTTTAGGAAGTCCAGGCCCAAAGTAGAGCCTC
CACCCACGGCTCCCAGTGTAGAGGAAATGCTGGCGGACATGGAAACGTTC
GAGGTCAATCAGCCTACGATAAGCGGATCTACAGACAACTTGGACTTGGA
GCACGCTTTCATGACTGAACCAGAGAATCTTCCCCTTTCAACATGGTGGC
AGATGTTCGACGAGTACGATCAGAAGGTGAAGAAACTGTCGGCCACCGTG
GGAGATCTGGAGACCCAACGAAATCAGTTAAAAGAATGCTATGCGAAGCT
GGAAAATAACGCGGATAAACTGAGAACGGACATCCAAAAGCAGCAGGCAC
TGGTCAAAGAAGCCCTTAAATGTTAAAAGCTTTCTAGACCAT

BS19728.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18731-RB 360 CG18731-PB 1..360 17..376 1800 100 Plus
CG18731-RA 360 CG18731-PA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18731-RB 615 CG18731-RB 180..539 17..376 1800 100 Plus
CG18731-RA 600 CG18731-RA 165..524 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29725255..29725614 17..376 1800 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:46:48 has no hits.

BS19728.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:42 Download gff for BS19728.complete
Subject Subject Range Query Range Percent Splice Strand
CG18731-RA 171..522 23..374 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:15 Download gff for BS19728.complete
Subject Subject Range Query Range Percent Splice Strand
CG18731-RA 171..522 23..374 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:06 Download gff for BS19728.complete
Subject Subject Range Query Range Percent Splice Strand
CG18731-RA 171..522 23..374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:06 Download gff for BS19728.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29725261..29725612 23..374 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:15 Download gff for BS19728.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25550983..25551334 23..374 100   Plus

BS19728.pep Sequence

Translation from 16 to 375

> BS19728.pep
MFRKSRPKVEPPPTAPSVEEMLADMETFEVNQPTISGSTDNLDLEHAFMT
EPENLPLSTWWQMFDEYDQKVKKLSATVGDLETQRNQLKECYAKLENNAD
KLRTDIQKQQALVKEALKC*

BS19728.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG18731-PB 119 CG18731-PB 1..119 1..119 624 100 Plus
CG18731-PA 119 CG18731-PA 1..119 1..119 624 100 Plus