BS19730.complete Sequence
1934 bp assembled on 2011-01-28
GenBank Submission: KX804425
> BS19730.complete
GAAGTTATCAGTCGACATGACAGCAATGGAGGAGTTCGCCGAGTACTATG
GAATGCCCAGCTGGAGCGTGACGAATGCGTTTCGCGTGCTCACACGCAAA
AAGCCCCTGGAGGACTCAAATGAATCCAAATTGGCCAAGGTCTTATCCGC
CTTCGATCTTACCGCCCTGGGAATCGGATCGACGTTGGGTGTAGGCGTTT
ACGTCCTAGCTGGCGAAGTGTCCAAGCAATATGCCGGTCCAGCCGTGGTC
GTAAGCTTCCTCATCGCTGCCATCGCCTCGATTTTCGCCGGGCTGTGCTA
TGCGGAATTCGGAGCTCGGGTTCCAAAGGCGGGATCGGCGTACATCTACA
GCTATGTGACCATTGGCGAGTTTATCGCCTTCCTCATCGGCTGGAATCTC
ATTCTCGAATACGCAATTGGCTCTGCCAGTGTCGTCAAGGGTTTAAGCAC
CTATCTCGATCAGCTTTGCGGCAATCCGATGAGCAGTTTCCTGGGCACCC
ACATGCCCCTCAACATCGAGGGAATGGGTGCCTATCCGGATCTGTTTGCC
TTCGTGGTGACCATACTTTTTTCCCTGGCCATTGCAGTTGGAGCCAAGGA
GTCCACCAGGGTGAACAATGTTTTCACTATGCTTAATCTTGGAGTCGTGT
TGTTCGTCATTATCGCGGGTCTTTTTAAAGTTTCCAGCAGCAACTGGTCC
ATTCCAAAATCTCAGGTACCCGAGGGCTACGGCGATGGTGGATTTATGCC
CTACGGAGTTTCGGGCATAATAAAAGGAGCTGCAGTTTGCTTTTACGGCT
TCATTGGCTTCGACTGCATTGCCACAGCTGGAGAGGAGGCCAAGAACCCC
AAGAAGTCCATTCCATTTGCTGTGATTGTCTCGCTGGCCATGATCTTCCT
AGCCTACTTTGGAGTGTCCACAGTGCTGACCATGATGCTGCCCTATTTTG
AGCAGGATGAGAAGGCTCCGCTGCCCCATGTCTTCCGGATAAATGGGTGG
CATGTGGCCGAGTATGTTGTCAGTATTGGAGCGATGTTTGGACTGTGCTC
CAGCATGATGGGAGCCATGTTCCCGCTGCCAAGGATCGTGTTTGCCATGT
CCAACGATGGACTGCTGTTCAAATTTCTCGGAGACATTAGCGAGAAGTAC
AAGACCCCTTTCAAGGGAACCATGATCACAGGTATGCTGACTGGCATTCT
GGCGGCAGTTTTCAATCTTAGCCAACTGGTGAACATGATGTCCATTGGCA
CTTTGTTGGCCTATTCCATGGTGGCCAGTTGTGTCCTTATGCTGCGCTAC
GAAGTGGACGATCGACGGGAGAGCCGCATTGTGGCAAACGGACGTGCCAC
GGGTCTGGAGCAGGATCGTCCGTGTGCTCTATGGAGGCGTATATTCAACC
TAAATGGTCAGACAGTACCCACAAAGCAGACTTCAAGGATCGTCACCTAC
AGTGTCACGCTGTTCTCTCTTTGGTGCATGGTTTTCTCGCAGATTCTAAC
CAAGTTCGAGGAGGATCTGGCTAACGTGACGTCCTTCGATGGTATTAAGC
TGGTGCTAGGCACCATACCCCTTGCAGTACTGCTCCTGGTCATCTCGCGT
CAGCCAACATCAGGGGTGAAATTGTCGTTCAAGGTGCCCTTGGTTCCCTG
GCTACCCGGCATTTCCATTTTGATCAACATTTACCTGATGATCAAGTTGG
ACATTCTCACATGGATTCGCTTCAGTATATGGATCGCCATAGGCCTGGCA
ATCTTCCTGGCCTATGGCATCCGTCACAGCCGGCTGAGGCAGCGGGAACA
GCGCAACAATTCCATTGCCATGATGCGGGACTGCAGCAATTCGGCGTTGT
TGGGCGGCCAGGAGAACTCAAAGTACAGCAACGAGGTGCCCCTGATATTG
ATGCACAGTACATCCTAAAAGCTTTCTAGACCAT
BS19730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5535-RC | 1893 | CG5535-PC | 1..1893 | 26..1918 | 9465 | 100 | Plus |
| CG5535-RB | 1866 | CG5535-PB | 1..1866 | 53..1918 | 9330 | 100 | Plus |
| slif-RB | 1815 | CG11128-PB | 724..881 | 788..945 | 310 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5535-RC | 2040 | CG5535-RC | 114..2017 | 16..1919 | 9520 | 100 | Plus |
| CG5535-RB | 2147 | CG5535-RB | 256..2124 | 51..1919 | 9345 | 100 | Plus |
| slif-RB | 2523 | CG11128-RB | 859..1016 | 788..945 | 310 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17853169..17853964 | 1466..671 | 3950 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17852647..17853099 | 1919..1467 | 2265 | 100 | Minus |
| 3L | 28110227 | 3L | 17854339..17854708 | 420..51 | 1850 | 100 | Minus |
| 3L | 28110227 | 3L | 17854009..17854270 | 680..419 | 1310 | 100 | Minus |
| 3L | 28110227 | 3L | 22892090..22892247 | 788..945 | 310 | 79.7 | Plus |
| 3L | 28110227 | 3L | 22891558..22891723 | 256..421 | 275 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:14:40 has no hits.
BS19730.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:43 Download gff for
BS19730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5535-RC | 85..1984 | 17..1916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:51 Download gff for
BS19730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5535-RC | 115..2014 | 17..1916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:27 Download gff for
BS19730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5535-RC | 115..2014 | 17..1916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:27 Download gff for
BS19730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17854340..17854707 | 52..419 | 100 | <- | Minus |
| 3L | 17856646..17856680 | 17..51 | 100 | | Minus |
| 3L | 17854009..17854269 | 420..680 | 100 | <- | Minus |
| 3L | 17852650..17853099 | 1467..1916 | 100 | <- | Minus |
| 3L | 17853169..17853954 | 681..1466 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:51 Download gff for
BS19730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17845750..17846199 | 1467..1916 | 100 | <- | Minus |
| arm_3L | 17846269..17847054 | 681..1466 | 100 | <- | Minus |
| arm_3L | 17847109..17847369 | 420..680 | 100 | <- | Minus |
| arm_3L | 17847440..17847807 | 52..419 | 100 | <- | Minus |
| arm_3L | 17849746..17849780 | 17..51 | 100 | | Minus |
BS19730.pep Sequence
Translation from 16 to 1917
> BS19730.pep
MTAMEEFAEYYGMPSWSVTNAFRVLTRKKPLEDSNESKLAKVLSAFDLTA
LGIGSTLGVGVYVLAGEVSKQYAGPAVVVSFLIAAIASIFAGLCYAEFGA
RVPKAGSAYIYSYVTIGEFIAFLIGWNLILEYAIGSASVVKGLSTYLDQL
CGNPMSSFLGTHMPLNIEGMGAYPDLFAFVVTILFSLAIAVGAKESTRVN
NVFTMLNLGVVLFVIIAGLFKVSSSNWSIPKSQVPEGYGDGGFMPYGVSG
IIKGAAVCFYGFIGFDCIATAGEEAKNPKKSIPFAVIVSLAMIFLAYFGV
STVLTMMLPYFEQDEKAPLPHVFRINGWHVAEYVVSIGAMFGLCSSMMGA
MFPLPRIVFAMSNDGLLFKFLGDISEKYKTPFKGTMITGMLTGILAAVFN
LSQLVNMMSIGTLLAYSMVASCVLMLRYEVDDRRESRIVANGRATGLEQD
RPCALWRRIFNLNGQTVPTKQTSRIVTYSVTLFSLWCMVFSQILTKFEED
LANVTSFDGIKLVLGTIPLAVLLLVISRQPTSGVKLSFKVPLVPWLPGIS
ILINIYLMIKLDILTWIRFSIWIAIGLAIFLAYGIRHSRLRQREQRNNSI
AMMRDCSNSALLGGQENSKYSNEVPLILMHSTS*
BS19730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5535-PC | 630 | CG5535-PC | 1..630 | 4..633 | 3206 | 100 | Plus |
| CG5535-PB | 621 | CG5535-PB | 1..621 | 13..633 | 3156 | 100 | Plus |
| slif-PB | 604 | CG11128-PB | 1..570 | 18..601 | 1580 | 52.4 | Plus |
| slif-PC | 604 | CG11128-PC | 1..570 | 18..601 | 1580 | 52.4 | Plus |
| slif-PA | 604 | CG11128-PA | 1..570 | 18..601 | 1580 | 52.4 | Plus |
