BS19734.complete Sequence
1571 bp assembled on 2011-01-04
GenBank Submission: KX804386
> BS19734.complete
GAAGTTATCAGTCGACATGATCACTGCTCGTCTCCTGCTCTCGCTGATGA
TGCCAGTGCTGCTGGACGCAGCTGCTCCGCCACGACGGCCGAATGTGGTG
ATGGTGATCTTTGATGATCTGCGTCCAGTTATTGGAGCTTATGGCGATAC
GCTGGCCAGCACGCCGTATTTGGATAACTTTGCTAGAGGAAGTCACATCT
TTACAAGAGTTTACAGCCAGCAATCCCTGTGTGCACCCAGCCGGAATTCG
CTGCTCACGGGTCGAAGACCGGATACTCTGCATCTGTACGATTTCTACAG
TTACTGGCGCACTTTCACCGGAAATTTCACCACTTTGCCGCAGTACTTCA
AGGAGCACGGATATTACACCTATAGCTGTGGAAAGGTCTTCCATCCTGGC
CTCTCATCCAACAACACGGATGACTATCCCCTTAGTTGGTCGGCTCCAGC
ATTTCGTCCCCGAACCGAGCAGTTTATGAACTCGCCAGTGTGTCCCGATA
AGGAGGGCATTCTGCGGAAGAATCTCATCTGTCCAGTGGAGCTACAAACT
CAGCCGTACAAAACGCTGCCGGACATCGAGTCCGTGGCGGAGGCATTGCG
CTTTGTGGGCTCACGGAGCAGGCACAGCCAGGAACCATTTTTTCTGGCCA
TGGGCTTCCACAAGCCGCACATTAATTTCCGGTTCCCACGGCAATTCCTT
TCCAGATTCAACCTTTCCCAGTTTTACAATTACACGGAGGATAGCCTGAA
GCCGCCGGATATGCCGGCAGTGGCCTGGAATCCTTACACAGATGTGCGGG
CCAGGGATGACTTCAAGCACTCCAACATATCCTTTCCCTACGGACCGATA
TCCCCACTCCAGGCTGCTCAGATACGACAGAGCTACTACGCCTCGGTGTC
CTATGTGGATGATCTGTTTGGCAAGTTGATTGGGGGATTGGATCTGGATG
AGACGGTGGTGGTCGCTCTGGGGGATCATGGCTGGTCTCTGGGTGAGCAC
GCCGAGTGGGCCAAGTACAGCAACTTCGAGGTGGCGCTCAGGGTTCCACT
GATCATAAGAAGTCCACAGTTCCCTGTCGCCCAAACGAAGTACTATCACG
GGATCACAGAACTCCTTGATGTTTTCCCCACTTTGGTGGATCTGGCAGGA
TTACCCAAATTGGACAAATGCCAGAGCTCTCAGGAGTTGACCTGTGGCGA
GGGAAAAAGTCTTTACCATCAGCTGATGGGATTGGGAAGGGCGGATGAGC
ACGTGGCTCTCAGTCAGTACCCAAGACCAGGAATGCTGCCCACAAAGCAC
CCGAACAGCGACAAGCCGAAGTTAAGGAATATAAAAATCATGGGCTATAG
TCTCAGAACCGATATATATAGGTATACCATGTGGGTGAGGTTCCATGCGC
AAAACTTTAGCAGAGATTGGCACGATGTGTATGGCGAGGAGTTGTACGAC
CACCGCCTGGATTCGGGCGAGGAATTGAACCTGATGCCCCTGCCGCAGTT
CGATGATGTGCGTCAGCGCCTTCGCCGGCGATTGATGGAGATGGTGGGCA
GCTAGAAGCTTTCTAGACCAT
BS19734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12014-RA | 1539 | CG12014-PA | 1..1539 | 17..1555 | 7680 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12014-RA | 1636 | CG12014-RA | 15..1556 | 14..1555 | 7695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3378549..3379571 | 219..1241 | 5100 | 99.9 | Plus |
| 3L | 28110227 | 3L | 3378282..3378488 | 14..220 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 3379622..3379796 | 1241..1415 | 875 | 100 | Plus |
| 3L | 28110227 | 3L | 3379862..3380003 | 1414..1555 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:46:18 has no hits.
BS19734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:41 Download gff for
BS19734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 18..1556 | 17..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:09 Download gff for
BS19734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 18..1556 | 17..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:56 Download gff for
BS19734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12014-RA | 18..1556 | 17..1555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:56 Download gff for
BS19734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3378285..3378488 | 17..220 | 100 | -> | Plus |
| 3L | 3378551..3379571 | 221..1241 | 99 | -> | Plus |
| 3L | 3379623..3379796 | 1242..1415 | 100 | -> | Plus |
| 3L | 3379864..3380003 | 1416..1555 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:09 Download gff for
BS19734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3378285..3378488 | 17..220 | 100 | -> | Plus |
| arm_3L | 3378551..3379571 | 221..1241 | 99 | -> | Plus |
| arm_3L | 3379623..3379796 | 1242..1415 | 100 | -> | Plus |
| arm_3L | 3379864..3380003 | 1416..1555 | 100 | | Plus |
BS19734.pep Sequence
Translation from 16 to 1554
> BS19734.pep
MITARLLLSLMMPVLLDAAAPPRRPNVVMVIFDDLRPVIGAYGDTLASTP
YLDNFARGSHIFTRVYSQQSLCAPSRNSLLTGRRPDTLHLYDFYSYWRTF
TGNFTTLPQYFKEHGYYTYSCGKVFHPGLSSNNTDDYPLSWSAPAFRPRT
EQFMNSPVCPDKEGILRKNLICPVELQTQPYKTLPDIESVAEALRFVGSR
SRHSQEPFFLAMGFHKPHINFRFPRQFLSRFNLSQFYNYTEDSLKPPDMP
AVAWNPYTDVRARDDFKHSNISFPYGPISPLQAAQIRQSYYASVSYVDDL
FGKLIGGLDLDETVVVALGDHGWSLGEHAEWAKYSNFEVALRVPLIIRSP
QFPVAQTKYYHGITELLDVFPTLVDLAGLPKLDKCQSSQELTCGEGKSLY
HQLMGLGRADEHVALSQYPRPGMLPTKHPNSDKPKLRNIKIMGYSLRTDI
YRYTMWVRFHAQNFSRDWHDVYGEELYDHRLDSGEELNLMPLPQFDDVRQ
RLRRRLMEMVGS*
BS19734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12014-PA | 512 | CG12014-PA | 1..512 | 1..512 | 2754 | 100 | Plus |
| Sulf1-PC | 1114 | CG6725-PC | 48..386 | 19..380 | 179 | 24.6 | Plus |
| Sulf1-PB | 1114 | CG6725-PB | 48..386 | 19..380 | 179 | 24.6 | Plus |
| Sulf1-PA | 1114 | CG6725-PA | 48..386 | 19..380 | 179 | 24.6 | Plus |
