BS19736.complete Sequence
2204 bp assembled on 2011-01-28
GenBank Submission: KX805340
> BS19736.complete
GAAGTTATCAGTCGACATGACAGACTCTCTGGAGTACAACGACATAAACG
CCGAAGTGCGCGGAGTCTTGTGTTCCGGACGCCTAAAGATGACCGAGCAG
AACATCATCTTCAAGAACACCAAGACCGGCAAGGTGGAGCAGATCTCGGC
AGAGGACATAGACCTGATCAATTCGCAGAAGTTCGTGGGCACCTGGGGAC
TGAGGGTGTTCACCAAAGGCGGCGTGCTCCACCGCTTCACCGGATTCCGC
GACAGCGAGCACGAGAAGCTGGGCAAGTTTATCAAGGCTGCCTACTCGCA
GGAGATGGTCGAGAAGGAGATGTGCGTCAAGGGCTGGAACTGGGGCACCG
CCCGCTTCATGGGCTCCGTCCTGAGCTTCGACAAGGAGTCGAAGACCATC
TTCGAGGTGCCGCTGTCGCACGTTTCGCAGTGCGTGACCGGCAAGAACGA
GGTCACCCTGGAGTTCCACCAAAACGACGATGCGCCCGTGGGTCTACTGG
AGATGCGGTTCCACATACCCGCCGTGGAGTCGGCCGAGGAGGATCCGGTA
GACAAGTTCCACCAGAACGTAATGAGCAAGGCCTCGGTCATCTCGGCTTC
GGGCGAGTCCATCGCCATTTTCAGAGAGATCCAGATCCTCACGCCTCGCG
GTCGCTATGACATCAAGATCTTCTCGACCTTCTTCCAGCTGCACGGCAAG
ACGTTCGACTACAAGATTCCCATGGACTCGGTGCTGCGGCTCTTCATGCT
GCCCCACAAAGACAGTCGACAGATGTTCTTTGTGCTCTCCTTGGATCCGC
CCATCAAGCAGGGACAAACGCGTTACCACTACCTGGTCCTGCTGTTTGCT
CCCGATGAGGAGACCACCATTGAGCTGCCATTCTCGGAAGCCGAGTTGCG
AGACAAGTACGAGGGCAAGCTGGAGAAAGAGATCTCCGGGCCGGTGTACG
AGGTGATGGGCAAAGTGATGAAGGTGCTGATCGGTCGAAAAATTACCGGA
CCCGGTAACTTTATCGGACACTCTGGCACGGCTGCAGTGGGCTGCTCGTT
CAAGGCTGCAGCTGGATATCTGTATCCCCTGGAGCGAGGATTCATCTATA
TCCACAAGCCACCGCTGCATATCCGCTTTGAGGAGATTAGTTCTGTGAAC
TTTGCCCGCAGCGGCGGATCCACGCGATCTTTCGACTTCGAAGTGACGCT
CAAGAACGGAACTGTTCACATCTTCTCCTCCATCGAGAAGGAGGAGTATG
CCAAGCTCTTCGACTACATCACACAGAAGAAGTTGCATGTCAGCAACATG
GGCAAGGACAAGAGCGGCTACAAGGACGTGGACTTTGGTGATTCGGACAA
CGAGAACGAACCAGATGCCTATCTGGCTCGCCTCAAGGCTGAGGCGAGGG
AAAAGGAGGAGGACGACGACGATGGCGACTCGGATGAAGAGTCCACGGAT
GAGGACTTCAAGCCCAACGAGAACGAGTCCGATGTGGCCGAGGAGTATGA
CAGCAACGTGGAGAGTGATTCGGACGATGACAGCGATGCTAGTGGCGGCG
GAGGCGACAGCGACGGCGCCAAGAAAAAGAAGGAGAAGAAGTCCGAGAAG
AAAGAGAAAAAGGAGAAAAAACACAAGGAGAAGGAGAGAACAAAGAAACC
CTCCAAGAAGAAGAAGGACTCTGGCAAACCCAAGCGCGCCACCACCGCTT
TCATGCTCTGGCTGAACGACACGCGCGAGAGCATCAAGAGGGAAAATCCG
GGCATAAAGGTTACCGAGATCGCCAAGAAGGGCGGCGAGATGTGGAAGGA
GCTGAAGGACAAGTCCAAGTGGGAGGATGCGGCGGCCAAGGACAAGCAGC
GCTACCACGACGAGATGCGCAACTACAAGCCTGAAGCGGGCGGTGACAGC
GACAACGAGAAGGGTGGAAAGTCCTCCAAGAAGCGCAAGACAGAGCCTTC
TCCATCCAAGAAGGCGAATACCTCGGGTAGCGGCTTCAAGAGCAAGGAGT
ACATTTCGGACGACGACTCCACCAGCTCCGACGACGAGAAGGACAACGAG
CCTGCCAAGAAGAAGAGCAAGCCGCCATCCGACGGCGATGCCAAGAAGAA
AAAGGCCAAGAGCGAGAGCGAACCGGAGGAGAGCGAGGAGGACAGCAATG
CCAGCGATGAGGATGAGGAAGATGAGGCCAGTGATTAGAAGCTTTCTAGA
CCAT
BS19736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssrp-RA | 2172 | CG4817-PA | 1..2172 | 17..2188 | 10815 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssrp-RA | 2507 | CG4817-RA | 142..2313 | 17..2188 | 10815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23807161..23808733 | 1642..70 | 7865 | 100 | Minus |
| 2R | 25286936 | 2R | 23806555..23807100 | 2188..1643 | 2685 | 99.5 | Minus |
| 2R | 25286936 | 2R | 23808810..23808863 | 70..17 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:14:01 has no hits.
BS19736.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:42 Download gff for
BS19736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssrp-RA | 133..2304 | 17..2188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:36 Download gff for
BS19736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssrp-RA | 142..2313 | 17..2188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:12 Download gff for
BS19736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ssrp-RA | 142..2313 | 17..2188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:12 Download gff for
BS19736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23806555..23807100 | 1643..2188 | 99 | <- | Minus |
| 2R | 23807161..23808732 | 71..1642 | 100 | <- | Minus |
| 2R | 23808810..23808863 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:36 Download gff for
BS19736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19694078..19694623 | 1643..2188 | 99 | <- | Minus |
| arm_2R | 19694684..19696255 | 71..1642 | 100 | <- | Minus |
| arm_2R | 19696333..19696386 | 17..70 | 100 | | Minus |
BS19736.pep Sequence
Translation from 16 to 2187
> BS19736.pep
MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDL
INSQKFVGTWGLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEK
EMCVKGWNWGTARFMGSVLSFDKESKTIFEVPLSHVSQCVTGKNEVTLEF
HQNDDAPVGLLEMRFHIPAVESAEEDPVDKFHQNVMSKASVISASGESIA
IFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSVLRLFMLPHKDS
RQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYEG
KLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAG
YLYPLERGFIYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTV
HIFSSIEKEEYAKLFDYITQKKLHVSNMGKDKSGYKDVDFGDSDNENEPD
AYLARLKAEAREKEEDDDDGDSDEESTDEDFKPNENESDVAEEYDSNVES
DSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHKEKERTKKPSKKKK
DSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKELKDKS
KWEDAAAKDKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPSPSKKA
NTSGSGFKSKEYISDDDSTSSDDEKDNEPAKKKSKPPSDGDAKKKKAKSE
SEPEESEEDSNASDEDEEDEASD*
BS19736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ssrp-PA | 723 | CG4817-PA | 1..723 | 1..723 | 3770 | 100 | Plus |
| HmgD-PD | 112 | CG17950-PD | 2..112 | 552..676 | 281 | 50.4 | Plus |
| HmgD-PC | 112 | CG17950-PC | 2..112 | 552..676 | 281 | 50.4 | Plus |
| HmgD-PB | 112 | CG17950-PB | 2..112 | 552..676 | 281 | 50.4 | Plus |
| HmgD-PA | 112 | CG17950-PA | 2..112 | 552..676 | 281 | 50.4 | Plus |
