Clone BS19739 Report

Search the DGRC for BS19739

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG6891-RA
Protein status:BS19739.pep: gold
Sequenced Size:524

Clone Sequence Records

BS19739.complete Sequence

524 bp assembled on 2011-01-04

GenBank Submission: KX803781

> BS19739.complete
GAAGTTATCAGTCGACATGTCGGACGGCATCGAGGTCGAGCAATTGGTGG
AGAGCAAGCCGAGAAGGATGCCGCTGGCCACGTCGCTGGAGAAGGACTCG
ATTCGCGAGGCCTACGAGGATGTACGCTCCGATCTGACAGACACCGAGTG
GGCGGTATTCAAGTTCGATGGCGCCCAGATTATTGTACATGCGCGCGGTC
AGTGCTTTGAGGAATTCCGACAGCAGTTCGGCGACTCGGAGCGCGCCTTT
GGCTACATACGCATCCAGATGGGTGACGAGATGTCCAAGCGCAAAAAGTT
CATCTTCCTGACGTGGATCGGGCAGGAGGTGGGCGTCATCCAGAGGGCCA
AGATGTCCACGGACAAGGCGCTGATCAAGGATGTCCTCAACAATTTTGCC
GTGGAACTTCAGGCGGGAGTGGAGGCCGAGCTGGACATTGAGCTCTTCCG
TGAAGCACTGAACCGTGCCGGCGGCGCCAACTACGGAACGGGCATCCGGG
ATAACTAAAAGCTTTCTAGACCAT

BS19739.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6891-RA 492 CG6891-PA 1..492 17..508 2460 100 Plus
CG6891-RC 441 CG6891-PC 1..441 68..508 2205 100 Plus
CG6891-RB 441 CG6891-PB 1..441 68..508 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6891-RA 994 CG6891-RA 351..843 16..508 2465 100 Plus
CG6891-RB 805 CG6891-RB 210..654 64..508 2225 100 Plus
CG6891-RC 950 CG6891-RC 359..799 68..508 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18780680..18781004 67..391 1625 100 Plus
X 23542271 X 18785786..18785927 250..391 650 97.2 Plus
X 23542271 X 18781078..18781194 392..508 585 100 Plus
X 23542271 X 18786001..18786073 392..464 365 100 Plus
X 23542271 X 18775578..18775629 16..67 260 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:47:48 has no hits.

BS19739.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:46 Download gff for BS19739.complete
Subject Subject Range Query Range Percent Splice Strand
CG6891-RA 350..839 17..506 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:27 Download gff for BS19739.complete
Subject Subject Range Query Range Percent Splice Strand
CG6891-RA 352..841 17..506 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:27 Download gff for BS19739.complete
Subject Subject Range Query Range Percent Splice Strand
CG6891-RA 352..841 17..506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:27 Download gff for BS19739.complete
Subject Subject Range Query Range Percent Splice Strand
X 18775579..18775629 17..67 100 -> Plus
X 18780681..18781004 68..391 100 -> Plus
X 18781078..18781192 392..506 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:27 Download gff for BS19739.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18669612..18669662 17..67 100 -> Plus
arm_X 18674714..18675037 68..391 100 -> Plus
arm_X 18675111..18675225 392..506 100   Plus

BS19739.pep Sequence

Translation from 16 to 507

> BS19739.pep
MSDGIEVEQLVESKPRRMPLATSLEKDSIREAYEDVRSDLTDTEWAVFKF
DGAQIIVHARGQCFEEFRQQFGDSERAFGYIRIQMGDEMSKRKKFIFLTW
IGQEVGVIQRAKMSTDKALIKDVLNNFAVELQAGVEAELDIELFREALNR
AGGANYGTGIRDN*

BS19739.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6891-PA 163 CG6891-PA 1..163 1..163 829 100 Plus
CG6891-PC 146 CG6891-PC 1..146 18..163 746 100 Plus
CG6891-PB 146 CG6891-PB 1..146 18..163 746 100 Plus