BS19742.complete Sequence
2597 bp assembled on 2011-01-28
GenBank Submission: KX804943
> BS19742.complete
GAAGTTATCAGTCGACATGGGAGTCCGCGGCCTGACCAGTTACATAGCGC
AGCGCGCGGAGATCTACCTTAAGCCGCACGAGCTGCACTCCACGGCGCTG
GTCATCGATGGCGACAACTTGAGCTGCAATCTGTACAAGGATGTCACCGG
GAGCTACTCCGCCTTCGGCGGCGACTACGACGACTTCTACCGCGCCGTGG
TGCAGTTCTTCCAGGTTCTGGCCGAGTGCAACATTCGGCCCTATGTGCTC
ATGGACGGCGGGTACGAGGAGCGCAAGCTGAGGACCGTTAGCACCCGGCT
GCGCAACAAGATTTCCGTGATCAAGAAGATAAACCCCAATGCATCCATCA
CGCTGTTCCCGCTGCACCTCAAGGAGGTTTTCGTGGACGCTGTGCGCGAC
TGCGGAGTCCCGGTGATGAGGTGCGTCTTTGAGGCGGACGACGAGTTGGC
TGCTCTGGCCAGGAAACTTAACTGCCCAGTGCTCTCCTACGACTCGGATT
TCTACATCCACAACGTCAAGTACATCCCGCTGATCACGCTGACTGTTAAG
GTTCTCACCAAGCAGGTGAAGGACAAGAACAGCAGCAACCAGAAGGACAG
TCGAGATCTACGTCACTGCGAGGCCAAGAATGTGAAGAAGCGCACCAGGG
CCAACAAGATTGTGACTGGCATTCAAACCACAGGGCTGACAGCCAGTACA
AAAGGCAGTTCCAAGACCTACAAGTACCTCGACTGCTGCATCTACCGGGT
GTCCCATCTCTGCGGACGAGGAACTCTGAGTCCCGAGAAGCTACCCCTTT
TTGCCGCCCTCCTGGGCAATGACTATATTGCCCGCAGTGCCTTCAAGAAC
TTTTTTGCTGCGGGAATGGGCAAAGCAGGACGAAGTCGCAAACTAAAGCT
CCAGCAGAAGCGCATACAGGTCATCCTCACATGGCTGAAGGAGGAAACGG
CGGAATCTGCTCTGGCTAAAGTGCTGTCGAGACTGAAAAAGAACCAGCGT
GATTCCCTGGTCTCCCAAGTGAATGCAGCCATCTCTGGTTACTCCAACGA
GTTGTGCCACGCCTACGATTACTTCGATGAGCACTACGAGAATGCTTTTC
CTTATATAGAACCCGTCAGTGAAGAGGAATGCAGCGACGATGAACATTCG
TCTAGCTCCGATGAAAAATTTTCAGATGTCGAAGAAGGCGAGGATCAGGA
GGAAGCTGATAACCAAGATGAGGAGCAGCAGGAAGAAAATCAAGACGTTG
ATTCGGGTGATGAAGAAGAAGAGGAGGCGGATGAAGGCCTCGAGCTGGAA
GTGGAAGACAAAACGCTACTCTTCCCACAATGGTTTCTGGACAAACTATA
TCCCGCGCACCTGCCCCGCAGCTTCGTGGACCTTATGCACCTGCGCAAGT
ACATCAACAACCCACAGATCGAGCACTTTCCCTTCCACGACTCCAATGAA
GTGGCCTTACCCATCCTGAACTACGTGTTCGCTCTTCTCCATCACGTAGA
GTGTGAGAAAATTGAGCTACCATTAGAAGTGGATATGGATATAGAGGGTT
CGACAGTCCCCTATCTCACCTACCTCACCAGAGCTCTGCGAGTGACGAAC
GTGAGGTATTTCAAGATGCCCATTGAAAAGAAGCCTGCCTATCCGTTTGA
TCCTCTTTCGCCGGATGCTAGGCATTTAAGAGCTGTATTCGAAGACAATG
CTCCCAATGCGGATACGGAGAAGTTGTTCAGCAAGCTCGACCAGTTGCCG
GAGGACCTGAGGCTGTACTTTCTGGCCATTATCTACTGGTTACATCGCTC
GGAGCACTGTGATTTGCTGCATCTTCACTCGCTGATCCTTAGTTTGGTTG
TCCTACGAACCATAGATGTTACAATCCCTGCTGAACGAGAGGTGAAAACC
TTCCTTAAAAGATTTGGCAAGACATTGAAAGCAGAGCGAGCAGTGAGGGA
TAAGGAAGCTGCCGAGGGAATTAAGCGCGGCATCAAACCTGCTCTGCTAG
AGCTTTCTGTTCCAGATCGGATGGCTCATGTACCCAAATCGGACTGCTAT
TTAACTCAGGAACGCCTACTGCCGCACTTCCATATGCAGGAGATCTTCAA
AAAGAAGTTTGACTTGTACTCCACCACGGTTATCCACGCATTTGCTGAAT
TTCAGGCTGTGGTTTACCAACTCAATGGGCTAAATTCTCTTTTGGATTTT
CCACTTTTGAGTCCGAGGATGAACCAGCTTTATTGCGGCGCCTTTCTCTA
CAACATGTATGATGTACTGAGGAATCGTGCCGATGTCCGCTACCATGTTG
AGAACTTCCTGCTGCCCGACTCCAAGTTGATGTTCGATTTCTATTGCTAC
TTGTACGACTGGTGCGCGGAGTTTATACCAACTTGGAAGCGATTGGAGGT
GGATCCGACGGCGGCAAAGGCCCTGCAGAAGAAGCGATTGAAGAAGCAGC
GTCAGGCGGCTAGGAAAGTGGAGCTAAGGGAGGCCATCGCGGATCCCAAT
GCGGAAATGGTCGAGGATGCCGATCCAGAAAACGACTTCTTCGATCTGAA
CAACAAATTCTGCGCACTCAAGGTAGCGTAGAAGCTTTCTAGACCAT
BS19742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ast-RA | 2565 | CG4426-PA | 1..2565 | 17..2581 | 12825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ast-RA | 2745 | CG4426-RA | 88..2652 | 17..2581 | 12825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1079119..1080710 | 990..2581 | 7960 | 100 | Plus |
| 2L | 23513712 | 2L | 1078035..1078570 | 17..552 | 2680 | 100 | Plus |
| 2L | 23513712 | 2L | 1078623..1079065 | 549..991 | 2215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:16:02 has no hits.
BS19742.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:45 Download gff for
BS19742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ast-RA | 56..2620 | 17..2581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:24 Download gff for
BS19742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ast-RA | 88..2652 | 17..2581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:04 Download gff for
BS19742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ast-RA | 88..2652 | 17..2581 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:04 Download gff for
BS19742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1078625..1079065 | 551..991 | 100 | -> | Plus |
| 2L | 1078035..1078568 | 17..550 | 100 | -> | Plus |
| 2L | 1079121..1080710 | 992..2581 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:24 Download gff for
BS19742.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1078035..1078568 | 17..550 | 100 | -> | Plus |
| arm_2L | 1078625..1079065 | 551..991 | 100 | -> | Plus |
| arm_2L | 1079121..1080710 | 992..2581 | 100 | | Plus |
BS19742.pep Sequence
Translation from 16 to 2580
> BS19742.pep
MGVRGLTSYIAQRAEIYLKPHELHSTALVIDGDNLSCNLYKDVTGSYSAF
GGDYDDFYRAVVQFFQVLAECNIRPYVLMDGGYEERKLRTVSTRLRNKIS
VIKKINPNASITLFPLHLKEVFVDAVRDCGVPVMRCVFEADDELAALARK
LNCPVLSYDSDFYIHNVKYIPLITLTVKVLTKQVKDKNSSNQKDSRDLRH
CEAKNVKKRTRANKIVTGIQTTGLTASTKGSSKTYKYLDCCIYRVSHLCG
RGTLSPEKLPLFAALLGNDYIARSAFKNFFAAGMGKAGRSRKLKLQQKRI
QVILTWLKEETAESALAKVLSRLKKNQRDSLVSQVNAAISGYSNELCHAY
DYFDEHYENAFPYIEPVSEEECSDDEHSSSSDEKFSDVEEGEDQEEADNQ
DEEQQEENQDVDSGDEEEEEADEGLELEVEDKTLLFPQWFLDKLYPAHLP
RSFVDLMHLRKYINNPQIEHFPFHDSNEVALPILNYVFALLHHVECEKIE
LPLEVDMDIEGSTVPYLTYLTRALRVTNVRYFKMPIEKKPAYPFDPLSPD
ARHLRAVFEDNAPNADTEKLFSKLDQLPEDLRLYFLAIIYWLHRSEHCDL
LHLHSLILSLVVLRTIDVTIPAEREVKTFLKRFGKTLKAERAVRDKEAAE
GIKRGIKPALLELSVPDRMAHVPKSDCYLTQERLLPHFHMQEIFKKKFDL
YSTTVIHAFAEFQAVVYQLNGLNSLLDFPLLSPRMNQLYCGAFLYNMYDV
LRNRADVRYHVENFLLPDSKLMFDFYCYLYDWCAEFIPTWKRLEVDPTAA
KALQKKRLKKQRQAARKVELREAIADPNAEMVEDADPENDFFDLNNKFCA
LKVA*
BS19742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ast-PA | 854 | CG4426-PA | 1..854 | 1..854 | 4464 | 100 | Plus |
