BS19746.complete Sequence
1220 bp assembled on 2011-01-04
GenBank Submission: KX803985
> BS19746.complete
GAAGTTATCAGTCGACATGCTAAATACCCGGCTAATTGCAATGTCGACTT
CCGATGGAGCCCCGGAAACCAAGAAACAACGTCCTGAAAGCAGCAGCAAC
GGCAGCAAGGACCAAAACGGAACGGAAGCCGGCGCCGAAGGCGACTCCCG
TGATAAAGTGGCGCTGATAACAGGCATAACGGGCCAGGATGGCTCCTATT
TGGCAGAGTTTCTGCTCAAGAAGGACTACGAGGTGCACGGCATTATTCGG
CGGGCCAGCACCTTCAACACCACCCGCATTGAGCATCTATATGCCGATCC
AAAGGCGCACAAAGGTGGGCGTATGAAGCTCCACTATGGCGACATGACGG
ACAGCAGCAGCCTGGTGAAGATCATCAATATGGTGAAGCCCACGGAGATT
TACAATTTGGCAGCACAATCCCATGTCAAGGTCTCCTTCGATCTCAGTGA
GTACACGGCCGAGGTGGACGCCGTGGGCACGTTGCGCATTCTGGACGCCA
TCCGCACTTGTGGCATGGAAAAGAACGTGAGGTTTTACCAAGCCTCCACT
TCGGAGCTATATGGTAAAGTAGTGGAGACGCCACAGAACGAACAGACGCC
CTTCTATCCCAGGTCGCCATATGCCTGCGCTAAGATGTACGGCTTTTGGA
TCGTCATCAACTACCGGGAAGCCTACAACATGTACGCCTGTAATGGAATC
CTCTTCAACCATGAAAGTCCACGACGTGGCGAGAACTTTGTGACTAGAAA
AATCACCCGTAGCGTGGCCAAGATTTATCACAAGCAAATGGAGTATTTTG
AACTGGGAAATCTCGACTCAAAGCGCGACTGGGGACATGCCAGCGACTAC
GTGGAGGCCATGTGGATGATGCTGCAACGGGAGTCTCCTTCCGACTACGT
CATAGCTACAGGCGAAACGCACAGTGTGCGCGAATTCGTGGAAGCCGCGT
TCAAGCATATTGATCGAGAGATAACGTGGAAGGGCAAGGGTGTGGACGAG
GTGGGAGTGGAGAACGGCACGGGTATTGTGCGCGTCCGCATAAATCCAAA
GTATTTTCGGCCGACGGAGGTCGATCTGCTGCAAGGCGACGCGTCCAAAG
CCAATCGAGAGCTAAACTGGACGCCTAAAGTTACCTTCGTGGAATTGGTT
AGCGACATGATGAAGGCTGACATCGAATTAATGAGGAAAAATCCAATCGC
TTAAAAGCTTTCTAGACCAT
BS19746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gmd-RA | 1188 | CG8890-PA | 1..1188 | 17..1204 | 5850 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gmd-RA | 1561 | CG8890-RA | 95..1282 | 17..1204 | 5850 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4975579..4976160 | 1204..623 | 2880 | 99.7 | Minus |
| 2L | 23513712 | 2L | 4976220..4976659 | 623..184 | 2185 | 99.8 | Minus |
| 2L | 23513712 | 2L | 4976758..4976929 | 188..17 | 815 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:47:17 has no hits.
BS19746.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:44 Download gff for
BS19746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 90..1275 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:21 Download gff for
BS19746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 95..1280 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:16 Download gff for
BS19746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gmd-RA | 95..1280 | 17..1202 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:16 Download gff for
BS19746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4975581..4976159 | 624..1202 | 99 | <- | Minus |
| 2L | 4976220..4976655 | 188..623 | 99 | <- | Minus |
| 2L | 4976759..4976929 | 17..187 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:21 Download gff for
BS19746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4975581..4976159 | 624..1202 | 99 | <- | Minus |
| arm_2L | 4976220..4976655 | 188..623 | 99 | <- | Minus |
| arm_2L | 4976759..4976929 | 17..187 | 98 | | Minus |
BS19746.pep Sequence
Translation from 16 to 1203
> BS19746.pep
MLNTRLIAMSTSDGAPETKKQRPESSSNGSKDQNGTEAGAEGDSRDKVAL
ITGITGQDGSYLAEFLLKKDYEVHGIIRRASTFNTTRIEHLYADPKAHKG
GRMKLHYGDMTDSSSLVKIINMVKPTEIYNLAAQSHVKVSFDLSEYTAEV
DAVGTLRILDAIRTCGMEKNVRFYQASTSELYGKVVETPQNEQTPFYPRS
PYACAKMYGFWIVINYREAYNMYACNGILFNHESPRRGENFVTRKITRSV
AKIYHKQMEYFELGNLDSKRDWGHASDYVEAMWMMLQRESPSDYVIATGE
THSVREFVEAAFKHIDREITWKGKGVDEVGVENGTGIVRVRINPKYFRPT
EVDLLQGDASKANRELNWTPKVTFVELVSDMMKADIELMRKNPIA*
BS19746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gmd-PA | 395 | CG8890-PA | 1..395 | 1..395 | 2065 | 100 | Plus |
