BS19748.complete Sequence
1103 bp assembled on 2011-01-04
GenBank Submission: KX806251
> BS19748.complete
GAAGTTATCAGTCGACATGAAAGACGCAAAGCCCTTTCCCGTGCTCAAGA
ATGATAACCTGCTGCGCGCCGCACGTGGCGAGGTGGTGGACCGGGTGCCT
GTTTGGGTGATGCGCCAAGCGGGGCGCTACCTGCCGGAGTTCCAGGAGCT
GCGAAAGCACCACGACTTCTTCACCGTCTGCCGCACCCCGGAGCTAGCGT
GCGAAGTGACCATGCAGCCATTGCGCCGCTTCGACCTGGACGCCTCCATA
ATTTTTTCGGACATCCTTGTCATTCCCCAAGCACTCGGCCTCACCGTGGA
GATGCACGCGGGCGTTGGTCCCGTTCTGCCACAGCCCATCGTGGTGCCGG
AGGACCTCAAGCGCCTGACGCCGGACGGAGCCTTGTCCCGCCTCAGCTAC
GTGGGCGACGCAATCACCATGATGCGGCACAAGCTCGAAGGTCGAGTGCC
GCTAATCGGCTTTACAGGAGCGCCGTGGACACTAATGGGATATATGATCG
AGGGCGGTGGGAGCAAGACCATGTCGAAAGCTAAAGCTTGGCTCAACGAA
CATCCTGAGGACTCTAAGCTGTTCCTGAACCTGCTGACCGACGCAATTGT
GGACTACCTGGAGATGCAGGTGAAAGCTGGCGCTCAAATGCTGCAGGTAT
TCGAATCGTCCGCCGAGCATCTCTCCAAGGAGCAGTTCCTGCAGTGGTGT
GTACCCTACCTGAAGAGAATACGCGACGAGCTGGTGGACCGTCTCACAAA
GAAGGCCATCCCCGTGGTTCCCATGACGCTGTTCGCTAAGGGTGCTGGGC
ACTCGCTGAAGGAGCAGAGCGAACTGGGCTACGACGTTATTGGCTTGGAT
TGGACTGTGGATCCGCTGGAGGCACGCAATTTGGTCGGACCGAACATTAC
GTTGCAAGGCAACTTGGATCCTCAGGACATGTACCGCGATCCTGATGAGC
TGCGCAACCTGACCACAGAAATGGTGCACAAGTTCGGCAAGTCGCGCTAC
ATCGCCAATCTGGGACATGGAATCACGCCTCAGACTCCGATCACGAGCAT
GGAAGTGCTGGTGGAGGCGGTGCACAAGGCTCTGTAGAAGCTTTCTAGAC
CAT
BS19748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Updo-RA | 1071 | CG1818-PA | 1..1070 | 17..1086 | 5320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Updo-RA | 1299 | CG1818-RA | 145..1214 | 17..1086 | 5320 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9584926..9585671 | 30..775 | 3700 | 99.7 | Plus |
| 2R | 25286936 | 2R | 9585730..9586041 | 775..1086 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:47:26 has no hits.
BS19748.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:45 Download gff for
BS19748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 121..1190 | 17..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:24 Download gff for
BS19748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 145..1214 | 17..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:19 Download gff for
BS19748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Updo-RA | 145..1214 | 17..1087 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:19 Download gff for
BS19748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9585731..9586041 | 776..1087 | 99 | | Plus |
| 2R | 9584928..9585671 | 32..775 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:24 Download gff for
BS19748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5472433..5473176 | 32..775 | 99 | -> | Plus |
| arm_2R | 5473236..5473546 | 776..1087 | 99 | | Plus |
BS19748.pep Sequence
Translation from 16 to 1086
> BS19748.pep
MKDAKPFPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHD
FFTVCRTPELACEVTMQPLRRFDLDASIIFSDILVIPQALGLTVEMHAGV
GPVLPQPIVVPEDLKRLTPDGALSRLSYVGDAITMMRHKLEGRVPLIGFT
GAPWTLMGYMIEGGGSKTMSKAKAWLNEHPEDSKLFLNLLTDAIVDYLEM
QVKAGAQMLQVFESSAEHLSKEQFLQWCVPYLKRIRDELVDRLTKKAIPV
VPMTLFAKGAGHSLKEQSELGYDVIGLDWTVDPLEARNLVGPNITLQGNL
DPQDMYRDPDELRNLTTEMVHKFGKSRYIANLGHGITPQTPITSMEVLVE
AVHKAL*
BS19748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Updo-PA | 356 | CG1818-PA | 1..356 | 1..356 | 1855 | 100 | Plus |
