Clone BS19750 Report

Search the DGRC for BS19750

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-SC1a-RA
Protein status:BS19750.pep: full length peptide match
Sequenced Size:590

Clone Sequence Records

BS19750.complete Sequence

590 bp assembled on 2011-02-24

GenBank Submission: KX801796

> BS19750.complete
GAAGTTATCAGTCGACATGGTTTCCAAAGTGGCTCTCCTCCTCGCCGTCC
TGGTCTGCAGCCAGTATATGGCCCAGGGCGTCTATGTCGTCTCCAAGGCG
GAGTGGGGTGGTCGCGGCGCCAAATGGACCGTAGGCCTGGGCAACTACCT
CAGCTACGCCATCATCCACCACACCGCCGGCTCCTACTGCGAGACCCGTG
CCCAGTGCAACGCCGTGCTGCAGAGCGTCCAGAACTACCACATGGACTCC
CTGGGCTGGCCCGACATCGGCTACAACTTCCTGATCGGCGGAGACGGCAA
CGTGTACGAGGGGCGTGGCTGGAACAACATGGGCGCCCACGCCGCCGAGT
GGAACCCCTACAGCATCGGCATCAGCTTCCTGGGCAACTACAACTGGGAC
ACCCTGGAGCCGAACATGATCTCCGCCGCCCAGCAGCTGCTCAACGACGC
CGTCAACCGTGGCCAGCTCAGCTCCGGCTACATCCTGTACGGTCATCGCC
AGGTCAGCGCCACCGAATGCCCCGGCACTCACATCTGGAACGAGATCCGC
GGCTGGTCCCACTGGTCTGGTTAGAAGCTTTCTAGACCAT

BS19750.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SC1b-RB 558 CG8577-PB 1..558 17..574 2790 100 Plus
PGRP-SC1b-RA 558 CG8577-PA 1..558 17..574 2790 100 Plus
PGRP-SC1a-RA 558 CG14746-PA 1..558 17..574 2745 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SC1b-RB 1649 CG8577-RB 30..589 16..575 2800 100 Plus
PGRP-SC1b-RA 626 CG8577-RA 30..589 16..575 2800 100 Plus
PGRP-SC1a-RA 588 CG14746-RA 30..588 16..574 2750 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8713475..8714034 16..575 2800 100 Plus
2R 25286936 2R 8709762..8710320 16..574 2750 99.5 Plus
2R 25286936 2R 8717084..8717512 137..565 780 78.8 Plus
Blast to na_te.dros performed 2014-11-26 15:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2385..2536 262..411 107 54.2 Plus

BS19750.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-24 11:51:09 Download gff for BS19750.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SC1b-RA 33..590 17..574 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:40 Download gff for BS19750.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SC1b-RA 31..588 17..574 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:19 Download gff for BS19750.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-SC1b-RA 31..588 17..574 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:19 Download gff for BS19750.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8713476..8714033 17..574 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:40 Download gff for BS19750.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4600981..4601538 17..574 100   Plus

BS19750.pep Sequence

Translation from 16 to 573

> BS19750.pep
MVSKVALLLAVLVCSQYMAQGVYVVSKAEWGGRGAKWTVGLGNYLSYAII
HHTAGSYCETRAQCNAVLQSVQNYHMDSLGWPDIGYNFLIGGDGNVYEGR
GWNNMGAHAAEWNPYSIGISFLGNYNWDTLEPNMISAAQQLLNDAVNRGQ
LSSGYILYGHRQVSATECPGTHIWNEIRGWSHWSG*

BS19750.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-SC1a-PA 185 CG14746-PA 1..185 1..185 1023 100 Plus
PGRP-SC1b-PB 185 CG8577-PB 1..185 1..185 1023 100 Plus
PGRP-SC1b-PA 185 CG8577-PA 1..185 1..185 1023 100 Plus
PGRP-SC2-PA 184 CG14745-PA 1..182 1..183 692 68.9 Plus
PGRP-LC-PE 329 CG4432-PE 165..326 24..184 408 47.5 Plus