BS19761.complete Sequence
1652 bp assembled on 2011-02-17
GenBank Submission: KX802672
> BS19761.complete
GAAGTTATCAGTCGACATGCAGTGTCCGTTCTTGAACCGCTTCACCGCCA
GCTTCATCCGCAACTACGCGGAGACGCTGTGCCAATCCTACGGGAGCCAC
TGTCCCGTGGTTGGGAAGACCTTGGTATCCGGCGAGAAGAAACTTTCACT
CGTCGCCGCAAGTGTTACAAGGTCTCACTCGACGGGGGCGAACGCCCACG
CCAATGCTGGTGGCCCCGCAACTGCCAACGCCACCGCTCCCGTCTCCGCC
CCCGCCTCTGCCGATCCTGGCAAGGCATCCGCCAAGGAGACCTTTCCCTA
CGAGCGCTTCTTCAACGAGCAGATCATGAAGAAGAAGCGGGACCATTCCT
ACAGGGTCTTCAAGAAGGTGAACCGCCTGGCAGGCGACGGGCTCTTCCCC
CACGCCCTGGAGTACTCGGAGCGGACGGAAAAGCCCATTACGGTGTGGTG
CTCCAATGACTACCTGGGAATGTCCGCCCACCCCGGCGTCAAGAGGGCCG
TCCAGGACGCGCTCAATAGGCACGGATCGGGGGCTGGCGGCACCAGGAAC
ATTTCGGGTAACTCTCTTCACCACGAGCGCCTCGAGAGTAAGCTGGCTGA
GCTCCACCAGAAGGAGGCTGCGCTGCTGTTCACGTCGTGCTTCGTGGCCA
ACGATTCCACTCTCTTTACGCTCGCCAAGCTCTTACCTGGGTGCGAGATC
TTCTCGGACGCAGGGAACCACGCTTCCATGATTATGGGCATACGGAACAG
CGGGGTTCCCAAGCACATCTTCCGGCACAACGACGTGGACCACTTGCATC
AGCTACTGAAGCAGACGGACAAAAGCGTGCCCAAGATCGTCGCATTCGAG
ACGGTACATTCCATGACGGGGGCCATCTGCCCGCTCGAGGAGCTGCTTGA
CGTGGCCCACGAGCACGGAGCCATCACGTTCATCGACGAGGTGCACGCCG
TGGGATTGTACGGTGACCACGGGGCCGGGGTCGGTGAGCGGGATGGTGTG
CTGCACAAAATGGACATCATATCGGGCACCCTGGGCAAGGCGTTCGGTAA
TATTGGTGGCTACATAGCTGGCACCCATAACCTGGTCGACATGATTCGGT
CGTATGCGGCCGGTTTCATCTTCACCACCTCACTACCGCCGACTGTGCTG
TGTGGCGCCCTGGAGGCCGTCAACATCCTGGCATCGGAGGAGGGTCGCCA
GCTGCGCCACTTGCACCAACGGAACGTCTCCTACCTGAAGAGCCTGCTGA
AGCGAGAAGGTTTCCCCGTCGAAGAAACGCCCAGCCACATCATTCCCATT
AAGATCGGAGACCCTCTGAAGAGCAGTCAAATCTCAAACGTGCTGATCGA
ACAATTCGGACACTACCTGCAGTCGATTAACTACCCAACCGTCGCCCGGG
GCCAGGAGAAATTGCGGCTGGCCCCCACCCCGTTCCACACTTTCGAAATG
ATGAACGCCCTGGTTACCGATCTAAAGAAAGTGTGGGAAATGGTGGACCT
CTCTACAAACGTCCCTCTTTCGCCCAACGCATGCATGTTCTGCAACTCGG
AGAGCTGCTGGCACCAGGACACCTCCCCGGATCTGGAGTGTGGCATTCCC
AACTGCCCTCGCCTGGAGATCTCGCTTGCAGCATAGAAGCTTTCTAGACC
AT
BS19761.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alas-RA | 1620 | CG3017-PA | 1..1620 | 17..1636 | 8010 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alas-RA | 1842 | CG3017-RA | 109..1733 | 12..1636 | 8020 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23964880..23966129 | 12..1261 | 6160 | 99.5 | Plus |
| 2R | 25286936 | 2R | 23966270..23966648 | 1258..1636 | 1880 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:39:56 has no hits.
BS19761.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:25 Download gff for
BS19761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alas-RA | 185..1804 | 17..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:01 Download gff for
BS19761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alas-RA | 114..1733 | 17..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:19 Download gff for
BS19761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alas-RA | 114..1733 | 17..1636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:19 Download gff for
BS19761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23964885..23966127 | 17..1259 | 99 | -> | Plus |
| 2R | 23966272..23966648 | 1260..1636 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:01 Download gff for
BS19761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19852408..19853650 | 17..1259 | 99 | -> | Plus |
| arm_2R | 19853795..19854171 | 1260..1636 | 99 | | Plus |
BS19761.pep Sequence
Translation from 16 to 1635
> BS19761.pep
MQCPFLNRFTASFIRNYAETLCQSYGSHCPVVGKTLVSGEKKLSLVAASV
TRSHSTGANAHANAGGPATANATAPVSAPASADPGKASAKETFPYERFFN
EQIMKKKRDHSYRVFKKVNRLAGDGLFPHALEYSERTEKPITVWCSNDYL
GMSAHPGVKRAVQDALNRHGSGAGGTRNISGNSLHHERLESKLAELHQKE
AALLFTSCFVANDSTLFTLAKLLPGCEIFSDAGNHASMIMGIRNSGVPKH
IFRHNDVDHLHQLLKQTDKSVPKIVAFETVHSMTGAICPLEELLDVAHEH
GAITFIDEVHAVGLYGDHGAGVGERDGVLHKMDIISGTLGKAFGNIGGYI
AGTHNLVDMIRSYAAGFIFTTSLPPTVLCGALEAVNILASEEGRQLRHLH
QRNVSYLKSLLKREGFPVEETPSHIIPIKIGDPLKSSQISNVLIEQFGHY
LQSINYPTVARGQEKLRLAPTPFHTFEMMNALVTDLKKVWEMVDLSTNVP
LSPNACMFCNSESCWHQDTSPDLECGIPNCPRLEISLAA*
BS19761.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alas-PA | 539 | CG3017-PA | 1..539 | 1..539 | 2837 | 100 | Plus |
| CG10361-PA | 417 | CG10361-PA | 62..395 | 137..475 | 522 | 33.5 | Plus |
| lace-PB | 597 | CG4162-PB | 220..597 | 146..508 | 310 | 26.2 | Plus |
| lace-PA | 597 | CG4162-PA | 220..597 | 146..508 | 310 | 26.2 | Plus |
| Spt-I-PC | 468 | CG4016-PC | 101..382 | 146..412 | 250 | 28.2 | Plus |
