BS19764.complete Sequence
3041 bp assembled on 2011-01-28
GenBank Submission: KX803979
> BS19764.complete
GAAGTTATCAGTCGACATGGACACGTCTATGCCTAACCAGCCCAAGTTCC
TGCCCCGCATTGAGCATAATTCCTCGGGCGCTACCGCCAACTCCTACGTG
GCCACCGCCTCCGGCAATCCCTTCGAAACGGACGATGAGGATGAAATCTT
CAGCAGACACAAGATGGTGCTCCGGGTGCCCAGCAACTGCACCGGCGACC
TGATGCACCTGGCCGTCTCGCGGAATTGGCTCGTCTGCCTGTTGGGCACG
CCGGAGCGGACAACTCTGCTGCGCTTCTTCCTGCCTCGCGCGATTCCACC
GGGAGAAGCGGTGCTGGAAAAGTACCTCTCTGGCTCCGGCTATAAAATAA
CACGCATGTTCCTGGACCCCACGGGCCATCACATCATTATCGCACTGGTG
CCAAAGTCCGCTACCGCTGGTGTCTCTCCGGACTTCCTGTACATCCACTG
CCTCGAGTCGCCCCAGGCGCAACAGCTGAAGGTGCGGCGCATCGAGAAGT
TCAAGGACCACGAGATAACGGCCGTCGCTTTCAATCCGTACCACGGCAAC
GAGTCCTCCACGGGGCCCATCCTGCTCGGCACAAGTCGGGGCCTCATATT
CGAGACCGAGCTGAATCCCGCAGCCGACGGTCATGTCCAGCGCAAGCAGC
TTTATGACCTGGGTCTGGGCCGTCCCAAGTACCCCATCACGGGCCTCAAG
CTGCTGCGGGTGCCCAACAGCAGTCGGTACATAATCGTGGTCACCAGTCC
CGAGTGCATCTACACATTCCAGGAGACGCTTAAGGCAGAGGAGCGCTCGC
TGCAGGCAATATTCGCGGGCTACGTGAGCGGAGTGCAGGAGCCGCACTGC
GAGGAGCGCAAGACTGATCTGACTTTCTCGCAGCTCCGCTTTTTCGCTCC
GCCGAACAGCAAGTATCCGAAGCAGTGGGCGTGGCTGTGTGGCGAGGGCA
TCCGTGTGGGCGAGCTATCCATCGAGGCAAACAGTGCCGCCACCCTGATA
GGAAACACTCTAATAAACCTGGACTTCGAGAAGACAATGCATCTGTCGTA
CGGCGAGCGGCGTCTCAACACTCCCAAAGCGTTCGTGCTGACCGAGTACC
ACGCCGTGCTGCTGTACGCGGATCATGTGCGGGCCATCTGCCTGCTGAAC
CAAGAGCAGGTCTACCAGGAAGCATTCGACGAGGCCCGAGTGGGCAAACC
GCTTAGCATCGAACGGGACGAGCTTACCGGCTCAATATACGTTTATACCG
TGAAAACCGTGTTTAACCTCAGGGTGACGCGAGAGGAGCGAAACGTGTGG
CGCATTTACCTCGACAAGGGTCAGTACGAGCTAGCAACGGCACACGCAGC
CGAGGATCCTGAACACCTTCAGCTTGTGCTCTGCCAGCGGGCGGATGCCG
CATTCGCGGACGGATCCTATCAGGTGGCAGCCGATTATTACGCTGAGACG
GACAAGTCCTTTGAAGAGGTGTGCTTGAAGTTCATGGTGCTGCCGGACAA
GCGACCGATTATCAACTACGTTAAGAAACGCCTTAGCCGAGTGACCACTA
AGCCAATGGAAACCGATGAGCTGGACGAGGACAAAATGAACATCATCAAG
GCGTTGGTCATCTGGCTAATTGACCTCTACCTCATCCAGATCAACATGCC
CGACAAGGACGAGGAGTGGCGCAGCTCGTGGCAGACGGAGTACGACGAGT
TCATGATGGAGGCCCATGTTCTGTCATGCACGCGTCAAAATCGCGAAACT
GTACGGCAGCTGATAGCCGAGCACGCTGACCCGCGCAACATGGCTCAATT
CGCCATCGCCATTGGCGACTATGATGAAGTGGTGGCGCAACAGCTTAAGG
CCGAGTGTTATGCCGAGGCACTGCAAACGCTGATTAACCAAAGGAATCCA
GAACTGTTCTACAAGTACGCGCCTGAACTGATAACTAGGCTGCCAAAGCC
CACGGTTGACGCCCTAATGGCCCAGGGATCTCGACTGGAGGTGGAGAAGC
TGGTCCCCACGCTCATAATCATGGAAAATCGCGAGCAGCGGGAACAGACC
CAACGATACCTTGAGTTCGCCATTTACAAACTAAACACGACCAATGACGC
CATCCACAATTTTCTGCTGCATTTGTACGCGGAGCACGAGCCCAAGCTGC
TGATGAAGTACCTCGAGATCCAGGGCCGCGACGAGAGCCTCGTCCACTAC
GATATCTATTACGCCCACAAAGTGTGCACCGACTTGGACGTGAAGGAAGC
TCGCGTGTTCCTCGAATGCATGCTGCGCAAGTGGATCTCTGCAGTGGATC
TGGCCCTCACGTTCGACATGAAGCTGGCCAAGGAAACCGCCTCCAGGCCG
TCGGACAGCAAGATCCGGCGGAAGCTCTGGCTTCGCATAGCTTATCACGA
CATAAAGGGAACCAACGACGTCAAAAAGGCATTGAATCTTTTGAAGGAGT
GCGATCTCTTACGCATCGAGGACCTACTGCCCTTCTTTGCAGACTTTGAA
AAAATCGACAACTTCAAGGAGGCAATCTGTGATGCTCTGAGGGATTACAA
TCAGCGCATCCAGGAGCTGCAGCGTGAAATGGCCGAGACTACGGAGCAAA
CCGATCGCGTCACCGCCGAGTTGCAGCAATTGCGCCAGCACAGCCTCACC
GTTGAGTCTCAGGATACTTGCGAAATTTGCGAGATGATGCTGCTGGTTAA
GCCCTTTTTCATCTTCATCTGCGGCCACAAGTTCCACAGCGATTGCCTGG
AGAAGCACGTTGTGCCCTTGCTCACCAAGGAGCAATGTCGGCGCCTCGGC
ACTCTAAAGCAGCAACTGGAGGCGGAGGTGCAAACGCAGGCGCAACCGCA
GTCAGGTGCCCTGAGCAAACAGCAGGCGATGGAGCTGCAGCGGAAGAGGG
CGGCACTGAAAACCGAGATCGAGGATATTCTTGCTGCGGATTGCCTATTC
TGCGGGCTGCTAATCAGCACCATCGACCAGCCGTTCGTTGACGACTGGGA
GCAGGTGAATGTCGAGTGGGAGTAGAAGCTTTCTAGACCAT
BS19764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dor-RA | 3009 | CG3093-PA | 1..3009 | 17..3025 | 14925 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dor-RA | 3161 | CG3093-RA | 72..3080 | 17..3025 | 14925 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1666185..1667612 | 963..2390 | 7080 | 99.7 | Plus |
| X | 23542271 | X | 1665472..1666132 | 304..964 | 3260 | 99.5 | Plus |
| X | 23542271 | X | 1667887..1668370 | 2542..3025 | 2420 | 100 | Plus |
| X | 23542271 | X | 1665123..1665411 | 17..305 | 1430 | 99.7 | Plus |
| X | 23542271 | X | 1667672..1667826 | 2389..2543 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:16:26 has no hits.
BS19764.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:45 Download gff for
BS19764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dor-RA | 69..3077 | 17..3025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:36 Download gff for
BS19764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dor-RA | 72..3080 | 17..3025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:14 Download gff for
BS19764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dor-RA | 72..3080 | 17..3025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:14 Download gff for
BS19764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1665123..1665411 | 17..305 | 99 | -> | Plus |
| X | 1665474..1666132 | 306..964 | 99 | -> | Plus |
| X | 1666187..1667612 | 965..2390 | 99 | -> | Plus |
| X | 1667674..1667825 | 2391..2542 | 100 | -> | Plus |
| X | 1667888..1668370 | 2543..3025 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:36 Download gff for
BS19764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1559156..1559444 | 17..305 | 99 | -> | Plus |
| arm_X | 1559507..1560165 | 306..964 | 99 | -> | Plus |
| arm_X | 1560220..1561645 | 965..2390 | 99 | -> | Plus |
| arm_X | 1561707..1561858 | 2391..2542 | 100 | -> | Plus |
| arm_X | 1561921..1562403 | 2543..3025 | 100 | | Plus |
BS19764.pep Sequence
Translation from 16 to 3024
> BS19764.pep
MDTSMPNQPKFLPRIEHNSSGATANSYVATASGNPFETDDEDEIFSRHKM
VLRVPSNCTGDLMHLAVSRNWLVCLLGTPERTTLLRFFLPRAIPPGEAVL
EKYLSGSGYKITRMFLDPTGHHIIIALVPKSATAGVSPDFLYIHCLESPQ
AQQLKVRRIEKFKDHEITAVAFNPYHGNESSTGPILLGTSRGLIFETELN
PAADGHVQRKQLYDLGLGRPKYPITGLKLLRVPNSSRYIIVVTSPECIYT
FQETLKAEERSLQAIFAGYVSGVQEPHCEERKTDLTFSQLRFFAPPNSKY
PKQWAWLCGEGIRVGELSIEANSAATLIGNTLINLDFEKTMHLSYGERRL
NTPKAFVLTEYHAVLLYADHVRAICLLNQEQVYQEAFDEARVGKPLSIER
DELTGSIYVYTVKTVFNLRVTREERNVWRIYLDKGQYELATAHAAEDPEH
LQLVLCQRADAAFADGSYQVAADYYAETDKSFEEVCLKFMVLPDKRPIIN
YVKKRLSRVTTKPMETDELDEDKMNIIKALVIWLIDLYLIQINMPDKDEE
WRSSWQTEYDEFMMEAHVLSCTRQNRETVRQLIAEHADPRNMAQFAIAIG
DYDEVVAQQLKAECYAEALQTLINQRNPELFYKYAPELITRLPKPTVDAL
MAQGSRLEVEKLVPTLIIMENREQREQTQRYLEFAIYKLNTTNDAIHNFL
LHLYAEHEPKLLMKYLEIQGRDESLVHYDIYYAHKVCTDLDVKEARVFLE
CMLRKWISAVDLALTFDMKLAKETASRPSDSKIRRKLWLRIAYHDIKGTN
DVKKALNLLKECDLLRIEDLLPFFADFEKIDNFKEAICDALRDYNQRIQE
LQREMAETTEQTDRVTAELQQLRQHSLTVESQDTCEICEMMLLVKPFFIF
ICGHKFHSDCLEKHVVPLLTKEQCRRLGTLKQQLEAEVQTQAQPQSGALS
KQQAMELQRKRAALKTEIEDILAADCLFCGLLISTIDQPFVDDWEQVNVE
WE*
BS19764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dor-PA | 1002 | CG3093-PA | 1..1002 | 1..1002 | 5221 | 100 | Plus |
