BS19769.complete Sequence
2114 bp assembled on 2011-01-28
GenBank Submission: KX806555
> BS19769.complete
GAAGTTATCAGTCGACATGGGCAGCGAGGACACAAGCTTTATTCCCGATC
TTCCCAGCGGTGGACCATTGGCCGTTTATAGGAAGAGGGCCAACTTCGAC
TGGAAGCGATTGCGACTGATATTCGAGAAGGAGCAGGGATTGCGAATTAA
GTACAAAGTGTGGCGTCGCCTGGAGAATGACCCGCTTTTTGCCCACCCAT
CCCGCACACTGCCCATGGACGAGCAGAAGCGCCTGTGCGCCATGCAAGTG
AATCGCATGAAGCACCTGGACCTGGTGCCCAAGGAGATCGAGAGCCTGAG
CTTCTCGGCCAAAACAAAGTATCTGATGTACATCAACGAGGCGTTGGCCT
GCTACTCGCCCAGTTTGTCGGTGAAGATAGCCCTGGGCGTGGGCCTGTTT
AACAATGCCATTCGTGCCATGGGAACCGAGAAGCACCAGAAATATATTGA
GGCAGCTTGGAATCGGGAGGTTATCACCTGCCTGGCCATCACGGAGCTAT
CGCATGGCAGCAACACGAAGAGCATCCGGACAACGGCCACCTATGATCCG
ACCACCCAGGAGTTTGTGATCAATACGCCGGACTTCGAGGCGGCCAAGTG
TTGGGTGGGAAATCTGGGTAAAACGGCCACGGTGGCCATGACTTTTGCTA
ATCTCTATACAGCTGATGGCCAGAATCATGGGCTCCACGGCTTCCTGATT
CCCATTCGCGATCCCAAGACACTGCTCTCATATCCTGGAGTTCTGGTCGG
CGATATTGGGGAGAAGTGTGGGCTGAATGGCATTGACAATGGATTTGTGG
TCTTCACCAACTACCGAATTCCCCGGGACAACCTGCTCAATCGCACCAGT
GACGTCACTCCGGAGGGGGTCTACGAAAGTGTGTTCACCGAACCCGGAAA
AGTCCTTGGGGCTGCACTCGAGAGCTTCTCCGCCGGGCGCATTGGCATAA
TGCAGGAATCGGCCAATACTCTGTGCAGTGCCGCCGTAATCGCAGTTCGT
TACTCCGCAGTGAGGAAGCAATTTGGCCCCGAGCGTCATGGCGAGGAAAT
GGCCATTCTGGAGTATCAACTGCATCAATATCGCATCTTTCCCTATCTGG
CGGCTGCCTGCGTTCAAAAAATTGCCACTGAAGAGCTGACAAGCACCTAT
ATGGAGATCATAGCGCGTTCCCAGGCGGATTCCAATGGATTTGATGTTCT
GACCCAGAATGCTGCGGAGATCCACGCGTTGATCTCGTCGTCGAAGCCTT
TGATCACCTGGGCAGCACGGGATGCCATCCAGGAAGCGCGAGAGGCCTGC
GGAGGACATGGCTATCTGCAAGCAGCTAAGCTTGGCCAGATGCGCACCGA
CCACGACCCACTGTGCACCTATGAGGGCGATAACAACGTCCTAGGACAAC
AGGCCTCCAACTGGCTGCTTCGCCAGTGGAGCGCCAAGGAACTGGAGACA
CCCATTGGCAGTGTGAAGTTCCTGGAGCGCCGAAGCGAGTTGCTGGCTCT
CAACTACGCGTCCTTGGCGCAGAAAACTCCAATAGCCAGCTGGCAGTTCT
CCCTTAGGTGCTACGAGTGGCTGCTGTGTCACCTGATGGCCAAGACCACA
GCTCACATCGAGGGTCAGCTGGCGGCGGGCAGCAGTAAGTTCGAGGCGAG
AAACAACTCCCAGGTGGCCGGAGCACGGGAACTGTCCCTGGCCTACGCGG
AGTACTATGCTCTGACGCGCTATGTGGATCACGTTAGTACACTGACAGTG
GAGGCGCCATATGCATCCGTACTCCGCCTGCTGTTCGACGTGTATGCCAT
GTGGCTGCTGGAGAAGCACATGACCACCTTCTATGTGGGTGGCTTTGCGG
CTGGGCGGGATTTCTCGGCTGCAGTGCGTCAACTGCTGCTGGACAGCTGC
CTGAAACTGAAGGACGTGGCCGTGAGCGTAGCTGATGCCATTTCGCCGCC
CGATTTCGCACTGAATTCGGTCATCGCCCGGGCGGATGGACTCCTCTACG
AGAACTTGCAGAACGAATTTATGACCAATGAGGGGGCATTCCAGCGACCC
TCCTGGTGGCGTGACGTAATCATTCCGCAGGCCCAGTCCAAGCTTTGAAA
GCTTTCTAGACCAT
BS19769.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17544-RD | 2082 | CG17544-PD | 1..2082 | 17..2098 | 10155 | 99.2 | Plus |
| CG17544-RB | 2082 | CG17544-PB | 1..2082 | 17..2098 | 10155 | 99.2 | Plus |
| CG17544-RC | 2082 | CG17544-PC | 1..2082 | 17..2098 | 10155 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17544-RD | 2553 | CG17544-RD | 173..2254 | 17..2098 | 10155 | 99.2 | Plus |
| CG17544-RB | 2474 | CG17544-RB | 94..2175 | 17..2098 | 10155 | 99.2 | Plus |
| CG17544-RC | 2565 | CG17544-RC | 185..2266 | 17..2098 | 10155 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19392066..19392991 | 1075..150 | 4450 | 98.7 | Minus |
| 2L | 23513712 | 2L | 19390669..19391219 | 2098..1548 | 2695 | 99.3 | Minus |
| 2L | 23513712 | 2L | 19391438..19391784 | 1547..1201 | 1735 | 100 | Minus |
| 2L | 23513712 | 2L | 19393497..19393631 | 151..17 | 660 | 99.3 | Minus |
| 2L | 23513712 | 2L | 19391839..19391968 | 1201..1072 | 635 | 99.2 | Minus |
| 2L | 23513712 | 2L | 6446927..6446985 | 615..557 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:17:30 has no hits.
BS19769.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:46 Download gff for
BS19769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17544-RB | 80..2160 | 17..2097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:03 Download gff for
BS19769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17544-RC | 185..2265 | 17..2097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:41 Download gff for
BS19769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17544-RC | 185..2265 | 17..2097 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:41 Download gff for
BS19769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19390670..19391219 | 1548..2097 | 99 | <- | Minus |
| 2L | 19391438..19391783 | 1202..1547 | 100 | <- | Minus |
| 2L | 19391839..19391964 | 1076..1201 | 100 | <- | Minus |
| 2L | 19392066..19392989 | 152..1075 | 98 | <- | Minus |
| 2L | 19393497..19393631 | 17..151 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:03 Download gff for
BS19769.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19390670..19391219 | 1548..2097 | 99 | <- | Minus |
| arm_2L | 19391438..19391783 | 1202..1547 | 100 | <- | Minus |
| arm_2L | 19391839..19391964 | 1076..1201 | 100 | <- | Minus |
| arm_2L | 19392066..19392989 | 152..1075 | 98 | <- | Minus |
| arm_2L | 19393497..19393631 | 17..151 | 99 | | Minus |
BS19769.pep Sequence
Translation from 16 to 2097
> BS19769.pep
MGSEDTSFIPDLPSGGPLAVYRKRANFDWKRLRLIFEKEQGLRIKYKVWR
RLENDPLFAHPSRTLPMDEQKRLCAMQVNRMKHLDLVPKEIESLSFSAKT
KYLMYINEALACYSPSLSVKIALGVGLFNNAIRAMGTEKHQKYIEAAWNR
EVITCLAITELSHGSNTKSIRTTATYDPTTQEFVINTPDFEAAKCWVGNL
GKTATVAMTFANLYTADGQNHGLHGFLIPIRDPKTLLSYPGVLVGDIGEK
CGLNGIDNGFVVFTNYRIPRDNLLNRTSDVTPEGVYESVFTEPGKVLGAA
LESFSAGRIGIMQESANTLCSAAVIAVRYSAVRKQFGPERHGEEMAILEY
QLHQYRIFPYLAAACVQKIATEELTSTYMEIIARSQADSNGFDVLTQNAA
EIHALISSSKPLITWAARDAIQEAREACGGHGYLQAAKLGQMRTDHDPLC
TYEGDNNVLGQQASNWLLRQWSAKELETPIGSVKFLERRSELLALNYASL
AQKTPIASWQFSLRCYEWLLCHLMAKTTAHIEGQLAAGSSKFEARNNSQV
AGARELSLAYAEYYALTRYVDHVSTLTVEAPYASVLRLLFDVYAMWLLEK
HMTTFYVGGFAAGRDFSAAVRQLLLDSCLKLKDVAVSVADAISPPDFALN
SVIARADGLLYENLQNEFMTNEGAFQRPSWWRDVIIPQAQSKL*
BS19769.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17544-PD | 693 | CG17544-PD | 1..693 | 1..693 | 3596 | 100 | Plus |
| CG17544-PB | 693 | CG17544-PB | 1..693 | 1..693 | 3596 | 100 | Plus |
| CG17544-PC | 693 | CG17544-PC | 1..693 | 1..693 | 3596 | 100 | Plus |
| CG17544-PA | 693 | CG17544-PA | 1..693 | 1..693 | 3596 | 100 | Plus |
| CG9527-PD | 703 | CG9527-PD | 20..692 | 4..684 | 1237 | 39.4 | Plus |
