Clone BS19774 Report

Search the DGRC for BS19774

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptMembrin-RA
Protein status:BS19774.pep: full length peptide match
Sequenced Size:683

Clone Sequence Records

BS19774.complete Sequence

683 bp assembled on 2011-01-04

GenBank Submission: KX801688

> BS19774.complete
GAAGTTATCAGTCGACATGGAGAGCCTGTACCACCAAACCAACAATGTGG
TAAAGGACATCGAGCGCGATTTCCAGCGACTGAGTCAGCTCAGTGCCCAG
GAATCGCTTGACGTGGAAAACGGCATTCAATTGAAGATTACCCAGGCGAA
CGCCAACTGCGATCGGTTGGATGTGCTGCTGTATAAGGTGCCACCTTCGC
AGCGACAAAGCTCCAAACTTCGTGTGGATCAGCTGAAATATGACCTGAGA
CACCTGCAGACATCACTGCAGACGGCGCGGGAACGAAGACAGCGACGAAT
GCAGGAGATCTCCGAGAGGGAACAGCTGCTGAATCACAGATTCACGGCAA
ACAGCGCGCAGCCGGAGGAAACGCGCCTGCAATTGGACTACGAACTGCAG
CATCATACGCAGCTGGGTAACGCCCATCGGGGTGTGGATGACATGATTGC
CTCGGGCAGCGGCATTCTCGAGAGCCTGATCTCGCAGAGAATGACGCTGG
GCGGAGCGCACAAGAGAATCCAGGCGATAGGCAGCACACTGGGTCTGTCC
AATCACACGATGAAACTTATTGAACGCCGGCTGGTCGAAGATCGTCGGAT
ATTCATCGGAGGAGTGGTGGTCACCTTGCTTATCATCGCCCTGATCATCT
ATTTCCTAGTGCTCTAAAAGCTTTCTAGACCAT

BS19774.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Membrin-RA 651 CG4780-PA 1..651 17..667 3165 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Membrin-RA 858 CG4780-RA 141..795 13..667 3185 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5366806..5367318 155..667 2505 99.2 Plus
3L 28110227 3L 5366595..5366735 13..153 690 99.3 Plus
Blast to na_te.dros performed on 2014-11-26 15:50:56 has no hits.

BS19774.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:55 Download gff for BS19774.complete
Subject Subject Range Query Range Percent Splice Strand
membrin-RA 115..763 17..665 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:35:55 Download gff for BS19774.complete
Subject Subject Range Query Range Percent Splice Strand
membrin-RA 145..793 17..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:30 Download gff for BS19774.complete
Subject Subject Range Query Range Percent Splice Strand
Membrin-RA 145..793 17..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:30 Download gff for BS19774.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5366599..5366735 17..153 99 -> Plus
3L 5366805..5367316 154..665 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:35:55 Download gff for BS19774.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5359699..5359835 17..153 99 -> Plus
arm_3L 5359905..5360416 154..665 99   Plus

BS19774.pep Sequence

Translation from 16 to 666

> BS19774.pep
MESLYHQTNNVVKDIERDFQRLSQLSAQESLDVENGIQLKITQANANCDR
LDVLLYKVPPSQRQSSKLRVDQLKYDLRHLQTSLQTARERRQRRMQEISE
REQLLNHRFTANSAQPEETRLQLDYELQHHTQLGNAHRGVDDMIASGSGI
LESLISQRMTLGGAHKRIQAIGSTLGLSNHTMKLIERRLVEDRRIFIGGV
VVTLLIIALIIYFLVL*

BS19774.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Membrin-PA 216 CG4780-PA 1..216 1..216 1073 100 Plus