BS19779.complete Sequence
2237 bp assembled on 2011-01-28
GenBank Submission: KX801342
> BS19779.complete
GAAGTTATCAGTCGACATGGCATTTGTCAGCAATGCAATTGTTGGCCCGG
AGAATTGCAAATCGGTAACGCCACCCATTCCGTATCCCAAGTCTGTGGCC
TTCATCATCAGCAATGAGTTCTGCGAGCGATTCAACTACTATGGCATGCG
CACCATCCTGGTGCTGTACCTCACCAACAAACTGGGCTACAATGAGGAGA
CGGCAACCGTACTTTTTCACACGTTCACCATGCTGGTCTACATCTTTCCC
CTGATCGGAGCTCTTATCGCCGATGGCTGGCTGGGAAAGTACAAGACGAT
ATTATATCTATCGCTGGTGTATAGCCTAGGGGCTATGGTGGTATCCTTTG
GTGCCGTTCCGCTATCGGGGATGCCAACTAAAGCTGTGACCGTTGTGGGA
CTCCTACTAATTGCGATCGGGACCGGTGGAATCAAGCCATGCGTTTCCGC
CTTTGGTGGCGACCAGTTCTCGCTGCCCGCGCAAAGTTTTCAGCTGGCAA
AGTTCTTCTCGTTGTTTTACTTTGCCATTAACGCAGGATCTTTGATTTCG
ACCACGTTCACCCCGATCTTGAGGGCAGACGTCCATTGTTTTGGCGATCA
GGATTGCTTCTCGCTGGCCTTTGGCGTGCCCGCCATCTTGATGATCTTCT
CGGTGATAATCTTCATGGCCGGCAAGCGGTTGTATAGGTGTCAGCCACCT
GCTGGCAACATGATCTTCGGGGTGTCGCGTTGCATTGCGGATGCGTTCAA
GGGATGGCAAAAGCGCAGGCACTCGGAGCCGATGGAGAGCTTTCTGGACT
ATGCCAAGCCGACGGTGGGGTCGCGAATGGTGCAGGAGACCAAGTGCCTG
GGCAGAATCCTACGACTCTTTCTGCCCTTCCCCGTCTTCTGGGCCCTCTT
TGACCAGCAGGGCTCGCGATGGACCTTCCAGGCCACACGAATGGACGGCA
ACGTGTTGGGTTTTCAGATAAAGCCCGATCAGATGCAGGTAGTCAATCCC
CTGCTCATCCTCGGGTTTCTGCCACTATTCGACTATATCATTTACCCTGC
TCTGGCACGTTGTGGAATAAGGCGACCACTGCAGAAGCTCACCTTAGGCC
TTCTTCTGGCAGCCTTAGGATTTTTCCTCTCAGCGGGTCTTGAGATGAAA
ATGGAGCAGGCTGCCTACAGAGCCACACCCATAGAGCCCGATATGACCCA
CCTGCGAATATACAATGGCATGCCCTGTCGCTATGAGATCTCGAGTGCAG
TGGTCCAAACTCCTCGCGTTATCGAACCTCTGAATGTGTGGGAGGATCTT
TCACTCCAGATGACCGAGTCCAAGGAATACACTTTTAATGCTCAGCCCGT
ATCCGGAGAGTGCCCTTCCATCATCGACAAGTTGCGTTTGCAACCAGGAA
AGTCAGTGAGTTACTTCCTAGCCCAGGACAAGCTCGTCGAGTTCGCCGAT
GGATTACAAATGGCCGCCACTGACACTGGTCGCACTTCAGTGAGAGCTCT
GCTAAACACGCCAGACGGCGAGGGACCTGTTCTTCTATCAACTGAGTCAG
CCACATCCCAGGAGCCACCGCTTACCCTGGACAAAGGCAATGTGCCGCAG
CTCCACAGGATCACGCCTGGCTTCGCTCGGGTAGACATCAACGGCAAAAA
AGTGGCCAGCTTCGAGGCCAAAGAAGGTAGACTCTACAGCATTCTGGTGA
CGGGAAGTGCCCGCGATGGGTACCAACACAATGTGATCGAGGTGGTAGCC
CTCAGTACCGTATCGATTCTGTGGCAGCTGCCCCAAATTGTCGTGATGAC
CGCAGCCGAGGTGATGTTCTCCGTGACAGGCTTGGAGTTCTCCTACTCAC
AGTCGCCGCCTAGTATGAAGAGTGTCCTGCAGGCCTGTTGGCTGCTCTCG
GTGGCCATTGGCAATATGCTAGTCGTGGTGATTGCCGAATTCAAGTTCAC
CAGCTCGCAATCCGGAGAGTTCACCCTGTTCGCCAGCCTTATGCTAGTGG
ATATGATGATCTTCTTGTGGCTAGCCCGCAGCTACCAGTACAAGGATCAG
CGGGAGGACTTCGAGGACGACGATGATGCGACAATCGATAGTGTTATGCA
GTCGAAGCCCAAAGCCACTACAGTTGATACTACCGCAAGGAAAACAAACG
GCATTGAGGCGGAACCAGGATACGGGGCCTACCGCAATCACGCCTACGAC
AACGATTTCTCGGAGGCCTAGAAGCTTTCTAGACCAT
BS19779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yin-RC | 2205 | CG44402-PC | 1..2205 | 17..2221 | 11025 | 100 | Plus |
| yin-RB | 2214 | CG44402-PB | 1..2214 | 17..2221 | 10900 | 99.6 | Plus |
| yin-RD | 2343 | CG44402-PD | 189..2343 | 67..2221 | 10775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yin-RC | 2565 | CG44402-RC | 153..2358 | 17..2222 | 11030 | 100 | Plus |
| yin-RB | 2574 | CG44402-RB | 153..2367 | 17..2222 | 10905 | 99.6 | Plus |
| yin-RD | 2670 | CG44402-RD | 308..2463 | 67..2222 | 10780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3863173..3865013 | 2222..382 | 9205 | 100 | Minus |
| X | 23542271 | X | 3865070..3865298 | 381..153 | 1145 | 100 | Minus |
| X | 23542271 | X | 3865358..3865440 | 152..70 | 415 | 100 | Minus |
| X | 23542271 | X | 3879953..3880163 | 1808..2018 | 395 | 79.1 | Plus |
| X | 23542271 | X | 3878255..3878376 | 1793..1914 | 310 | 83.6 | Plus |
| X | 23542271 | X | 3866512..3866565 | 70..17 | 270 | 100 | Minus |
| X | 23542271 | X | 3877186..3877313 | 884..1011 | 265 | 80.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:11:35 has no hits.
BS19779.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:05:41 Download gff for
BS19779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 153..2357 | 17..2221 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:31 Download gff for
BS19779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 153..2357 | 17..2221 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:15 Download gff for
BS19779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yin-RC | 153..2357 | 17..2221 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:15 Download gff for
BS19779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3863174..3865013 | 382..2221 | 100 | <- | Minus |
| X | 3865070..3865298 | 153..381 | 100 | <- | Minus |
| X | 3865358..3865439 | 71..152 | 100 | <- | Minus |
| X | 3866512..3866565 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:31 Download gff for
BS19779.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3757207..3759046 | 382..2221 | 100 | <- | Minus |
| arm_X | 3759103..3759331 | 153..381 | 100 | <- | Minus |
| arm_X | 3759391..3759472 | 71..152 | 100 | <- | Minus |
| arm_X | 3760545..3760598 | 17..70 | 100 | | Minus |
BS19779.pep Sequence
Translation from 16 to 2220
> BS19779.pep
MAFVSNAIVGPENCKSVTPPIPYPKSVAFIISNEFCERFNYYGMRTILVL
YLTNKLGYNEETATVLFHTFTMLVYIFPLIGALIADGWLGKYKTILYLSL
VYSLGAMVVSFGAVPLSGMPTKAVTVVGLLLIAIGTGGIKPCVSAFGGDQ
FSLPAQSFQLAKFFSLFYFAINAGSLISTTFTPILRADVHCFGDQDCFSL
AFGVPAILMIFSVIIFMAGKRLYRCQPPAGNMIFGVSRCIADAFKGWQKR
RHSEPMESFLDYAKPTVGSRMVQETKCLGRILRLFLPFPVFWALFDQQGS
RWTFQATRMDGNVLGFQIKPDQMQVVNPLLILGFLPLFDYIIYPALARCG
IRRPLQKLTLGLLLAALGFFLSAGLEMKMEQAAYRATPIEPDMTHLRIYN
GMPCRYEISSAVVQTPRVIEPLNVWEDLSLQMTESKEYTFNAQPVSGECP
SIIDKLRLQPGKSVSYFLAQDKLVEFADGLQMAATDTGRTSVRALLNTPD
GEGPVLLSTESATSQEPPLTLDKGNVPQLHRITPGFARVDINGKKVASFE
AKEGRLYSILVTGSARDGYQHNVIEVVALSTVSILWQLPQIVVMTAAEVM
FSVTGLEFSYSQSPPSMKSVLQACWLLSVAIGNMLVVVIAEFKFTSSQSG
EFTLFASLMLVDMMIFLWLARSYQYKDQREDFEDDDDATIDSVMQSKPKA
TTVDTTARKTNGIEAEPGYGAYRNHAYDNDFSEA*
BS19779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yin-PC | 734 | CG44402-PC | 1..734 | 1..734 | 3787 | 100 | Plus |
| yin-PB | 737 | CG44402-PB | 1..737 | 1..734 | 3773 | 99.6 | Plus |
| yin-PA | 743 | CG44402-PA | 21..743 | 12..734 | 3701 | 99.2 | Plus |
| yin-PD | 780 | CG44402-PD | 64..780 | 18..734 | 3700 | 100 | Plus |
| CG2930-PD | 803 | CG2930-PD | 122..778 | 21..678 | 1541 | 48.2 | Plus |
