BS19780.complete Sequence
620 bp assembled on 2011-01-04
GenBank Submission: KX804848
> BS19780.complete
GAAGTTATCAGTCGACATGGAACCCTTCTTCGCGAGCTGTGACCAGAAAG
TGAGAGATGGTGGCTGGATGGTGATCGCCTATAGATTCGATGGCAGCGAG
GACTTCAACAAGGATTGGCAGAACTATAAGGCCGGTTTTGGCGCTTTAAA
CTCGGAGTTCTTTATCGGATTGGATAAGCTGCACAGGTTGACCAACAGTG
AGCACCACGAGTTGCTCATCATAATGAAGAAGAAAAGTGGAGAGGAACGT
TTCGCGCTGTACGATCACTTCAGTATTGGCAGTGAATCGGAAAAGTATCT
TCTATATGTACTTGGTGCCTACAAAGGTGATGCTGGTGATTCGCTACGTT
ACCATGCGGGCAAGAAGTTCACCACATTCGATCAGGATAACGACGATAAT
GGCCAAAACTGCGCCAGGACGCATGCAGGTGCCTGGTGGTATGGAAGGGA
GTGCTTCGAGAGCAACTTGTTTGGTACATTCCAGTCGAAGTACGGACAGG
AGATTGGCTATTTCAAGGGCATCCTGTGGAAATCCTTCCTGCCAGGACCC
ACTGGCTCGCTTAGCTATGTCCGCATGCTCATCCGGCCGCTCAAGAAACA
GTAGAAGCTTTCTAGACCAT
BS19780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1791-RC | 1002 | CG1791-PC | 415..1002 | 17..604 | 2940 | 100 | Plus |
| CG1791-RB | 588 | CG1791-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
| CG1791-RA | 1005 | CG1791-PA | 418..1005 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1791-RC | 1176 | CG1791-RC | 519..1107 | 17..605 | 2945 | 100 | Plus |
| CG1791-RB | 1193 | CG1791-RB | 536..1124 | 17..605 | 2945 | 100 | Plus |
| CG1791-RA | 1179 | CG1791-RA | 522..1110 | 17..605 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9963725..9964170 | 462..17 | 2230 | 100 | Minus |
| X | 23542271 | X | 9963522..9963666 | 605..461 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:51:35 has no hits.
BS19780.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:56 Download gff for
BS19780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1791-RB | 536..1123 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:00 Download gff for
BS19780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1791-RA | 522..1109 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:42 Download gff for
BS19780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1791-RA | 522..1109 | 17..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:42 Download gff for
BS19780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9963523..9963664 | 463..604 | 100 | <- | Minus |
| X | 9963725..9964170 | 17..462 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:00 Download gff for
BS19780.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9857556..9857697 | 463..604 | 100 | <- | Minus |
| arm_X | 9857758..9858203 | 17..462 | 100 | | Minus |
BS19780.pep Sequence
Translation from 16 to 603
> BS19780.pep
MEPFFASCDQKVRDGGWMVIAYRFDGSEDFNKDWQNYKAGFGALNSEFFI
GLDKLHRLTNSEHHELLIIMKKKSGEERFALYDHFSIGSESEKYLLYVLG
AYKGDAGDSLRYHAGKKFTTFDQDNDDNGQNCARTHAGAWWYGRECFESN
LFGTFQSKYGQEIGYFKGILWKSFLPGPTGSLSYVRMLIRPLKKQ*
BS19780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1791-PB | 195 | CG1791-PB | 1..195 | 1..195 | 1069 | 100 | Plus |
| CG1791-PC | 333 | CG1791-PC | 139..333 | 1..195 | 1069 | 100 | Plus |
| CG1791-PA | 334 | CG1791-PA | 140..334 | 1..195 | 1069 | 100 | Plus |
| CG1889-PC | 332 | CG1889-PC | 138..328 | 1..191 | 631 | 58.6 | Plus |
| CG1889-PA | 332 | CG1889-PA | 138..328 | 1..191 | 631 | 58.6 | Plus |
