Clone BS19788 Report

Search the DGRC for BS19788

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:197
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptNPF-RA
Protein status:BS19788.pep: full length peptide match
Sequenced Size:341

Clone Sequence Records

BS19788.complete Sequence

341 bp assembled on 2011-01-04

GenBank Submission: KX805699

> BS19788.complete
GAAGTTATCAGTCGACATGTGCCAAACAATGCGTTGCATCCTGGTTGCCT
GTGTGGCCCTTGCCCTCCTAGCCGCCGGCTGCCGAGTGGAGGCGTCCAAC
TCCAGACCTCCGCGAAAGAACGATGTCAACACTATGGCTGATGCCTACAA
GTTCCTGCAGGATCTGGACACCTACTACGGCGACAGAGCCCGCGTTCGGT
TCGGAAAGCGCGGATCGCTGATGGATATCCTGAGGAATCACGAGATGGAC
AACATAAATCTAGGAAAAAATGCCAACAATGGAGGAGAATTTGCTCGCGG
TTTTAATGAGGAGGAGATATTCTAAAAGCTTTCTAGACCAT

BS19788.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
NPF-RC 309 CG10342-PC 1..309 17..325 1545 100 Plus
NPF-RB 309 CG10342-PB 1..309 17..325 1545 100 Plus
NPF-RA 309 CG10342-PA 1..309 17..325 1545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
NPF-RC 579 CG10342-RC 86..395 17..326 1550 100 Plus
NPF-RB 518 CG10342-RB 25..334 17..326 1550 100 Plus
NPF-RA 569 CG10342-RA 76..385 17..326 1550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16610779..16611055 17..293 1385 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:52:10 has no hits.

BS19788.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:55:59 Download gff for BS19788.complete
Subject Subject Range Query Range Percent Splice Strand
npf-RA 75..381 17..323 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:04 Download gff for BS19788.complete
Subject Subject Range Query Range Percent Splice Strand
npf-RA 76..382 17..323 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:53 Download gff for BS19788.complete
Subject Subject Range Query Range Percent Splice Strand
NPF-RA 76..382 17..323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:53 Download gff for BS19788.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16610779..16611054 17..292 100 -> Plus
3R 16611108..16611138 293..323 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:04 Download gff for BS19788.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12436501..12436776 17..292 100 -> Plus
arm_3R 12436830..12436860 293..323 100   Plus

BS19788.pep Sequence

Translation from 16 to 324

> BS19788.pep
MCQTMRCILVACVALALLAAGCRVEASNSRPPRKNDVNTMADAYKFLQDL
DTYYGDRARVRFGKRGSLMDILRNHEMDNINLGKNANNGGEFARGFNEEE
IF*

BS19788.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
NPF-PC 102 CG10342-PC 1..102 1..102 537 100 Plus
NPF-PB 102 CG10342-PB 1..102 1..102 537 100 Plus
NPF-PA 102 CG10342-PA 1..102 1..102 537 100 Plus